Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05844 and BPUM_3471
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_05844___ywcD.1.24716.seq
# -bsequence dna-align/BPUM_3471___ywcD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05844___ywcD-BPUM_3471___ywcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05844___ywcD-BPUM_3471___ywcD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05844___ywcD
# 2: BPUM_3471___ywcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 397
# Identity: 267/397 (67.3%)
# Similarity: 267/397 (67.3%)
# Gaps: 26/397 ( 6.5%)
# Score: 849.0
#
#
#=======================================
BSNT_05844___ 1 ATGTATATCATTATGGGGGTTTTCACAACCATTGTGAATATCGCCAGCTT 50
||||||.|..|.|||||.||.|..||||||||.||.||.||.|.||||||
BPUM_3471___y 1 ATGTATCTTGTGATGGGTGTGTGTACAACCATCGTCAACATAGTCAGCTT 50
BSNT_05844___ 51 TTATATATTGGTAGAGAT------CATGAATGTGGATTACAAAGCCGCCA 94
.||..||||.||.||||| || |||||||.|||.|.||.|
BPUM_3471___y 51 CTACTTATTCGTTGAGATGTTTTCCA------TGGATTATAAAACAGCTA 94
BSNT_05844___ 95 CTGTTGCCGCTTGGAT-TTTGTCCGTGCTGTTTGCTTACATAACAAATAA 143
|.||||...|.|||.| |||| |.||.||.||||||||.||.||.|||||
BPUM_3471___y 95 CAGTTGTTTCATGGGTATTTG-CTGTTCTCTTTGCTTATATCACCAATAA 143
BSNT_05844___ 144 ATTATATGTGTTTCAGCAAAAAACACATGATCTGCAGAGCCTGCTGAAAG 193
....|||||.||..|||||||..|.|.||||..|.|.|||||..||...|
BPUM_3471___y 144 GAAGTATGTCTTCAAGCAAAAGGCTCGTGATACGAAAAGCCTTATGCGTG 193
BSNT_05844___ 194 AGCTCACTGCTTTTTTCAGCGTTCGGGTCCTGTCTCTCGGCATAGATTTA 243
||||..||.|.|||||.||.|||||..||.|||||||.||..|.|||.|.
BPUM_3471___y 194 AGCTTTCTTCATTTTTTAGTGTTCGTCTCATGTCTCTAGGTGTCGATCTG 243
BSNT_05844___ 244 GGCATGATGATCATTCTTGTCGGCCA------GTTCAATACAAATGAAAC 287
||..|||||||..|..||||..|||| |.|| ||||||||
BPUM_3471___y 244 GGGCTGATGATTTTATTTGTGAGCCAAATGGCGCTC------AATGAAAC 287
BSNT_05844___ 288 CTTGGCCAAAATACTCGACAACGCGGTCATTGTTGTCGTCAACTATGTTG 337
..|.||.|||||.||.|.||||...||.|||||.|||||.||.||.||.|
BPUM_3471___y 288 GGTCGCAAAAATTCTTGTCAACTTTGTGATTGTGGTCGTGAATTACGTCG 337
BSNT_05844___ 338 CGAGCAAATGGCTCGTCTTTAAAAAAACAAAAGAAGAAGGGGTATGA 384
|.||.||||||.|||||||.||.||||||||||||||.|.|.|.|.|
BPUM_3471___y 338 CCAGTAAATGGTTCGTCTTCAAGAAAACAAAAGAAGATGCGATTTAA 384
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