Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05856 and BPUM_3483
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05856___thiE.1.24716.seq
# -bsequence dna-align/BPUM_3483___thiE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05856___thiE-BPUM_3483___thiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05856___thiE-BPUM_3483___thiE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05856___thiE
# 2: BPUM_3483___thiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 729
# Identity: 457/729 (62.7%)
# Similarity: 457/729 (62.7%)
# Gaps: 120/729 (16.5%)
# Score: 1275.0
#
#
#=======================================
BSNT_05856___ 1 ATGACTCGTATTTCTCGGGAAA---TG-----------ATGAAAGAGTTA 36
||||| ||| || ||.|||.||..|
BPUM_3483___t 1 ATGAC--------------AAAAACTGATCAACAGCAAATCAAACAGCAA 36
BSNT_05856___ 37 TTATCTGTTTACTTCATTATGGGGTCAAATAATACGAAAGCCG--ATCCT 84
|||||.|||||.||.||||||||..||...||||| |||||| |.||.
BPUM_3483___t 37 TTATCGGTTTATTTTATTATGGGAACAGCGAATAC--AAGCCGGCAACCG 84
BSNT_05856___ 85 GTTACAGTTGTACAAAAAGCGTTAAAAGGCGGTGCCACCCTGTACCAGTT 134
.||...||..||.||.|.|||.|..|||||||...||||.|||..||.||
BPUM_3483___t 85 CTTGATGTGTTAAAAGAGGCGATTCAAGGCGGAATCACCATGTTTCAATT 134
BSNT_05856___ 135 CCGTGAAAAAGGCG-GGGATGCGCTGACAGGAGAGGCTCGGATTGAATTT 183
.||.|||||.|||| |||| ||..||..||||||.|....||...||||.
BPUM_3483___t 135 TCGAGAAAAGGGCGAGGGA-GCCTTGCAAGGAGAAGAGAAGAAACAATTG 183
BSNT_05856___ 184 GCTGAAAAAGTGCAGGCAGCCTGCCGTGAAGCCGGTGTTCCGTTCATTGT 233
|||....||.|.||.|.|...||||..|||||...|||||||||..||||
BPUM_3483___t 184 GCTCGTCAACTTCAAGTACTTTGCCAAGAAGCGAATGTTCCGTTTGTTGT 233
BSNT_05856___ 234 CAATGATGATGTGGAATTGGC------TCT-GAAGCTGAAAGCTGACGGT 276
.|||||||||||..||.|.|| ||| ||.|| ||.||.||
BPUM_3483___t 234 AAATGATGATGTTCAACTAGCGATAGATCTAGATGC----AGATGGCG-- 277
BSNT_05856___ 277 ATCCACATCGGCCAGGAAGACGCAAACGCGAAAGAGGTAAGAGCTTCC-- 324
|.||..|.||.||||||||..||||.||..||||.||.||| |
BPUM_3483___t 278 -TACATGTTGGACAGGAAGATACAAATGCAGAAGACGTCAGA-----CAA 321
BSNT_05856___ 325 ---ATAGGTGATATGATTCTCGGCGTTTCTGCTCAT-ACGATGTCT---- 366
||.||.||||..||..|.||.||.|||.|.||| || ||
BPUM_3483___t 322 AAAATCGGGGATAAAATATTAGGTGTATCTACGCATAAC-----CTAGAC 366
BSNT_05856___ 367 GAGGTGAAGCAAGC--TGAAGAAGACGGAGCGGATTATGTCGGGCTTGGG 414
||.|||||.||||| ||| |||||||.||.||||||||| |||.||||
BPUM_3483___t 367 GAAGTGAAACAAGCCATGA--AAGACGGTGCAGATTATGTC-GGCATGGG 413
BSNT_05856___ 415 -CCGATCTATCCGACTGAAACGAAAAAAGATACGAG-AGCGGTACAAGGG 462
||..|||||||.||.|||||||||||.|||||..| || .||.|||||.
BPUM_3483___t 414 TCCAGTCTATCCAACAGAAACGAAAAAGGATACACGCAG-TGTCCAAGGA 462
BSNT_05856___ 463 GTATCTCTTATTGA----AGCAGTTCGCCGCCAAGG-CATCAGCATTCCA 507
| |||.||||| .|.|||.||.|..||.|| |.||| .|||||.
BPUM_3483___t 463 G----TCTCATTGATCACTGAAGTGCGTCATCATGGACTTCA-TATTCCG 507
BSNT_05856___ 508 ATTGTCGGCATCGGCGGCATCACAATA-GATAATGCCGCACCTGTTATCC 556
|||||.||||||||.||.|||.| ||| ||||||||.|||||.||.||.|
BPUM_3483___t 508 ATTGTTGGCATCGGGGGTATCGC-ATACGATAATGCAGCACCAGTCATAC 556
BSNT_05856___ 557 AAGCGGGGGCCGATGGTGTCAGTATGATCAGCGCCATAAGTCAG-GCGGA 605
||||.||.||.||||||.||||.||.|||||||||||.||.||| || |.
BPUM_3483___t 557 AAGCAGGAGCAGATGGTATCAGCATCATCAGCGCCATTAGCCAGAGC-GC 605
BSNT_05856___ 606 GGATCCTGAGAGTGCTGCACGCAAGTTTCGGGAGGAAATTCAA----AC- 650
.||||||.|||..||.||| ||.||| |.|| ||
BPUM_3483___t 606 TGATCCTAAGAAAGCAGCA------------GAAGAA--TTAAGAGCACT 641
BSNT_05856___ 651 -GTATAAAACAGGAAGA---------TAA 669
|| ||.|.|||.||.| |||
BPUM_3483___t 642 TGT-TACATCAGAAAAAGCATTACTTTAA 669
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