Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05566 and BPUM_3499

See Amino acid alignment / Visit BSNT_05566 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_05566___ywoF.1.24716.seq
#    -bsequence dna-align/BPUM_3499.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05566___ywoF-BPUM_3499.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05566___ywoF-BPUM_3499.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05566___ywoF
# 2: BPUM_3499
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1678
# Identity:     889/1678 (53.0%)
# Similarity:   889/1678 (53.0%)
# Gaps:         521/1678 (31.0%)
# Score: 2096.5
# 
#
#=======================================

BSNT_05566___      1 ATGAGAAA------AT----GGTATTTTA-TTCTTTTGGCGGGTGTTTTA     39
                     ||  ||||      ||    ||||||||| ||.|||         |.||.
BPUM_3499          1 AT--GAAACGAGCGATACCAGGTATTTTACTTATTT---------TATTC     39

BSNT_05566___     40 ACGTCTGTCATCCTC----GCTTTCGTTTATGATAAGACAAAAGCGAATG     85
                     |.|.|.||||||..|    |||.||                ||||| |||
BPUM_3499         40 ATGACCGTCATCAGCTTCGGCTGTC----------------AAGCG-ATG     72

BSNT_05566___     86 AGGAAGGA-TCTGGGGAT---------------TATCTGTATGTTTCGCT    119
                     |.|.|||| .||||.|.|               ||||   |.||..||..
BPUM_3499         73 ACGGAGGAGGCTGGCGCTAAGCAAAGCACAGCCTATC---ACGTAGCGAC    119

BSNT_05566___    120 AAATGGCAGTGATCAAAATGAAGGAACAAAAGAAAAACCGTTTCGTACAT    169
                     |||.||.|..|||.||||...||||||.||..|||||||.|||||     
BPUM_3499        120 AAACGGAAACGATAAAAACCCAGGAACGAAGCAAAAACCTTTTCG-----    164

BSNT_05566___    170 TGGCACACGCATCTGAGAA-------------GGCTGCTGCCGGCACAAC    206
                          ||||   ||||.||             |||....|||||.|||||
BPUM_3499        165 -----CACG---CTGAAAAAAGCGGCAAGTATGGCGAAAGCCGGGACAAC    206

BSNT_05566___    207 TGTCATGATT-CGGGAG----GGCACGTATCATGAGA-------------    238
                        |||  || ||.|||    |||||.|||.|.||||             
BPUM_3499        207 ---CAT--TTACGTGAGAGGCGGCACATATAAAGAGAAATTGATTGTCCG    251

BSNT_05566___    239 CCCTTGATGT------AAAGCACAGCGGTACGGACGGAAAGCCTATCACA    282
                     ||.||.|.||      |||||||  ||||              ||||   
BPUM_3499        252 CCATTCAGGTACAAAGAAAGCAC--CGGT--------------TATC---    282

BSNT_05566___    283 TTCCGAAAC-TAT-GAAAATGAAAACGTCGTGATTAGCGGTGAATCCATT    330
                     ||.| ||.| ||| |||||..|||||.| ||.||||||||.|..||..||
BPUM_3499        283 TTTC-AAGCTTATGGAAAAGAAAAACCT-GTTATTAGCGGGGCTTCACTT    330

BSNT_05566___    331 ACGAACGCTGAATATGAAACA-----CCG-CTTATTCGTATTCACGAT--    372
                     |  ||    |.|.||.||.||     |.| |||       .|||||||  
BPUM_3499        331 A--AA----GGAAATCAAGCAGATGGCGGTCTT-------GTCACGATCG    367

BSNT_05566___    373 -----AAACATGACATTGCCATCAGCGGTTTAACAAT--------TCAAG    409
                          |||..|.|||||.||.|||..|||.|.|||.|        |||||
BPUM_3499        368 ATCAAAAAAGTTACATTACCCTCAAAGGTCTGACAGTGGGACATCTCAAG    417

BSNT_05566___    410 A------------------------TCTTTCTGTTTCATCTGAGGAAGCA    435
                     |                        ||..|.| |||||||..||||||| 
BPUM_3499        418 ACGAATAAAGAAGACCTGACCCCAGTCGGTAT-TTTCATCAAAGGAAGC-    465

BSNT_05566___    436 ACTGCTATAGGGATTTATGTATCAGGGTCCAGCAGTCATATTGCCATTAA    485
                              ||||                .||..||||.|.|.|      
BPUM_3499        466 ---------GGGA----------------AAGGCGTCAAACTTC------    484

BSNT_05566___    486 GGATAATC-ACATCCG-GGGTATTAAGACAACTGCGGATG----------    523
                           || |||.||| |.||||   ||||  |.|.||.|          
BPUM_3499        485 ------TCAACAACCGAGTGTAT---GACA--TTCAGACGACACACAAAA    523

BSNT_05566___    524 AAGGAAATGCTCACGGAATCGCAGTTTATGGGAC-----------TGGCA    562
                     |.||.|||||.|||||.||.||.||.|||||.||           .||| 
BPUM_3499        524 ATGGGAATGCGCACGGTATTGCGGTCTATGGAACAAAAGCTCCAGCGGC-    572

BSNT_05566___    563 GCATGAAAGACATCCAAATC-GAGGACAATACAGTTGAGAAACTGACGCT    611
                      |||..||||.||..||||| .|||| ||.||.|||||.|||.|.|.|||
BPUM_3499        573 -CATTGAAGATATTGAAATCAAAGGA-AACACTGTTGAAAAATTAAAGCT    620

BSNT_05566___    612 TGGAGCGAGTGAAGCAGTTGTGCTGAACGGTAATATCGACGGCTTCAC--    659
                     |||....||||||||..|||||||.||.||.||         |.||||  
BPUM_3499        621 TGGCTTCAGTGAAGCGCTTGTGCTCAATGGAAA---------CGTCACTA    661

BSNT_05566___    660 AGTTGCAGGCAATGT------------GGTCCGCAACAATAACAACATCG    697
                     ||||.|     .|||            |||.|||.|||...|.||.||.|
BPUM_3499        662 AGTTTC-----GTGTGACACATAACACGGTTCGCCACACGGATAATATAG    706

BSNT_05566___    698 GGATTGATCTAATTGGTTATGAGGGAACCGCGGA-----TAAAA---ACG    739
                     |.||||||.|||||||||.|||  ||||...|.|     |||||   |||
BPUM_3499        707 GTATTGATTTAATTGGTTTTGA--GAACGTAGCACCTTCTAAAAAGTACG    754

BSNT_05566___    740 ATTACGTGCGAAACGGAATCGT----AGAAAACAA----TAC-AGTTTAT    780
                     ||.|.||..|||||||..|.||    || ||||||    ||| ||.||| 
BPUM_3499        755 ATCAAGTCAGAAACGGTGTTGTATCAAG-AAACAAAGTGTACGAGATTA-    802

BSNT_05566___    781 CAAAACTCGACT-TACGGCAATCCTGCTTATGGAGATGA-ATACTCAGCG    828
                            |||.| || ||.|||||.||.|||||..|.|| || |||.||.
BPUM_3499        803 -------CGAGTGTA-GGAAATCCAGCCTATGGCAAAGACAT-CTCCGCT    843

BSNT_05566___    829 GGCGGGATTTATGTCGATGG-----AGGACA-CAAGATCGAAATTAAGAA    872
                     ||.||.||||||||.|||||     |||||| ...|||.||...|||.|.
BPUM_3499        844 GGTGGCATTTATGTGGATGGCGGGAAGGACATTGTGATTGACCATAATAT    893

BSNT_05566___    873 CAACACAGTTTACGATAACGATATTGGGATTGAAGCAACGTCTGAACACA    922
                     | |||||  |.||   ||.||..||||.|||||||..||...||||||.|
BPUM_3499        894 C-ACACA--TCAC---AATGACCTTGGAATTGAAGTCACAAGTGAACATA    937

BSNT_05566___    923 AAGGAAAGTATGCAAATGCCATTCAGAT--------CACTG---ACAACA    961
                     ||||||       |||||    .|||||        ||.||   ||||..
BPUM_3499        938 AAGGAA-------AAATG----GCAGATCGTATTCGCATTGAACACAATC    976

BSNT_05566___    962 AAGTGTA---CAACAATGCG-TACACCGGTATTTCAATCGGAGGATATGA   1007
                     |||||||   .|||    || ||.||.||.||||||||.||.||.|||||
BPUM_3499        977 AAGTGTATTTGAAC----CGTTATACAGGCATTTCAATTGGCGGTTATGA   1022

BSNT_05566___   1008 CAAAAAGCGGGGCGGCACCAGCAAT-------TCTCTGATTGCCCGCAAT   1050
                     .||||||||.|||||.||.|..|||       ||||..||       |||
BPUM_3499       1023 TAAAAAGCGAGGCGGAACAACAAATACGACGATCTCACAT-------AAT   1065

BSNT_05566___   1051 ATTATGTACCGGAATGACACAAAGGGACTGTACGGCGGACAGCTGCTGCT   1100
                     |||.|.|||...|||||||||...||..|..|.|||||.||..||.||.|
BPUM_3499       1066 ATTTTATACAAAAATGACACAGCTGGCTTAGAAGGCGGCCAATTGTTGAT   1115

BSNT_05566___   1101 GCAGTA-CGATACGAAAAACAACACAATTGAA-----AAGAATATATTGA   1144
                     |||.|| |.|..||..|      |||||.|||     |..|||||..|||
BPUM_3499       1116 GCAATATCAAGCCGTGA------ACAATCGAATCACGAGCAATATCATGA   1159

BSNT_05566___   1145 CGGCCGGTGATTCCAG-ATTATTTA-TCG-GAAACGATTTTA--CAGAAA   1189
                     |.||..|||..||  | ||||.||| ||| |||.|   ||||  .||..|
BPUM_3499       1160 CAGCGAGTGCCTC--GCATTACTTAGTCGTGAATC---TTTATGGAGTGA   1204

BSNT_05566___   1190 ATGAAGGAAATACGGTCAATCATAACGTGT------ACCACAA-----GG   1228
                     ||.||...||||...||.|..|.|||||.|      |||.|||     .|
BPUM_3499       1205 ATCAAAAGAATATCTTCCAAAAGAACGTATATGATGACCGCAAAGGTGCG   1254

BSNT_05566___   1229 AAGCGGATCA-AG----------ACGGCATTTGGATGTGGA-------AA   1260
                     ||| |.|||| ||          .|||.|..||||  ||||       ||
BPUM_3499       1255 AAG-GCATCACAGTGGGTATGGCGCGGGAAATGGA--TGGAGGGCTACAA   1301

BSNT_05566___   1261 AAGAAAGAATATGATTCATTTTCGTCGTA----TCTAAAAGC-AACA--A   1303
                     ||                       ||||    ||||||||| .|||  |
BPUM_3499       1302 AA-----------------------CGTATCTCTCTAAAAGCGGACAAGA   1328

BSNT_05566___   1304 AAAACGATCAG-------CAATCCATATATGCCGATCCGATGTTTCGTG-   1345
                     .|||.||||||       |||||||.|               .||.||| 
BPUM_3499       1329 TAAAGGATCAGCACACCTCAATCCACA---------------ATTTGTGA   1363

BSNT_05566___   1346 ATG------AAGCGTCCTATGATTTTTCGTTAGATCCTGA-------TTC   1382
                     |||      ||      ||||| ||||||      |||||       .||
BPUM_3499       1364 ATGAGAAAAAA------TATGA-TTTTCG------CCTGAAGAAGTCATC   1400

BSNT_05566___   1383 ACCTGCGCGGCCTGTCATTG--AATAA-   1407
                     ||||||...|....||||.|  |||.| 
BPUM_3499       1401 ACCTGCTAAGAAAATCATCGGAAATTAA   1428


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