Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05919 and BPUM_3512
See
Amino acid alignment /
Visit
BSNT_05919 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_05919___yxlD.1.24716.seq
# -bsequence dna-align/BPUM_3512___yxlD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05919___yxlD-BPUM_3512___yxlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05919___yxlD-BPUM_3512___yxlD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05919___yxlD
# 2: BPUM_3512___yxlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 239
# Identity: 140/239 (58.6%)
# Similarity: 140/239 (58.6%)
# Gaps: 58/239 (24.3%)
# Score: 364.5
#
#
#=======================================
BSNT_05919___ 1 ATGACACAAACAGAAATCGTCATAACGGTTGCGGCTTAT----CTCATCG 46
||||...|.||.||.||..|||| ||||| |.|||.|
BPUM_3512___y 1 ATGAGTGAGACGGAGATGATCAT-----------CTTATTGTGCGCATTG 39
BSNT_05919___ 47 -------TATTGGCGCAGGGAATCTTTTTATTTATTGATGCGAAAAAACG 89
||||.||||||||..|..||||||||||.||||||||.|||.|
BPUM_3512___y 40 CCGTTACTATTTGCGCAGGGCTTGCTTTTATTTATGGATGCGAAGAAAAG 89
BSNT_05919___ 90 AAATCGCATGGC-------ATGGATTTGGGGAATTGTCGGACTGATTACA 132
|.||| .|||.|||||||.||||||||..|.||||
BPUM_3512___y 90 -------AGGGCGTTATAAGTGGTTTTGGGGCATTGTCGGTTTAATTA-- 130
BSNT_05919___ 133 GCA----CCGATG-CCTCTGATTTGTTATTACTTTTTTGTCAT-TAGGCC 176
| |||..| |.||| ||||..||||...|||.||||.| || .||
BPUM_3512___y 131 --ACTTCCCGTCGTCTTCT-ATTTTATATTGGCTTTGTGTCGTGTA-CCC 176
BSNT_05919___ 177 GGATCGGAAGAAAAG----GGGGATC----AAGCAATGA 207
.|||| |||.||||| |..|||| ||| |.|||
BPUM_3512___y 177 TGATC-GAAAAAAAGAAGAGAAGATCCGAAAAG-ATTGA 213
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.