Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01271 and BPUM_3515
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_01271___pel.1.24716.seq
# -bsequence dna-align/BPUM_3515___pelB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01271___pel-BPUM_3515___pelB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01271___pel-BPUM_3515___pelB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01271___pel
# 2: BPUM_3515___pelB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1421
# Identity: 674/1421 (47.4%)
# Similarity: 674/1421 (47.4%)
# Gaps: 550/1421 (38.7%)
# Score: 1225.5
#
#
#=======================================
BSNT_01271___ 1 ---ATGAAAAAAGT---GATGTTAGCTGCGGCTTTGT-TTTTAG-GATTG 42
|.||||||||| .|||||||||| || |.|||| |.|||
BPUM_3515___p 1 TTGAAGAAAAAAGTTCCAATGTTAGCTG-------GTGTGTTAGCGGTTG 43
BSNT_01271___ 43 ACTCCAGCTGGCGCGAACGCAGCTGATTTAGGCCACCAGACGTTGGGATC 92
|.|.|| |||.|| ||..| ||.|.|.|
BPUM_3515___p 44 ---------GTCTCG--------TGACTT----CATTA----TTTGCACC 68
BSNT_01271___ 93 CAATGATGGCTGGGGCGCGTACTCGACCGGCACGACAGGCGGATCAAAAG 142
.|| ||||| ||| ||||||
BPUM_3515___p 69 TAA-------TGGGG---------------------AGG-----CAAAAG 85
BSNT_01271___ 143 CATCCTCCTCAAATGTGTATACCGTCAGCAACAGAAACC----AGCTTGT 188
||.|||||| ||.|.|| |||...|
BPUM_3515___p 86 ----------------------CGGCAGCAA-AGTATCCCGAAAGCCCTT 112
BSNT_01271___ 189 CTCGGCATTAGGGAAGGAAACGAACACAACGCCAAAAATCATTTATATCA 238
|| ||||.| |||| ||||..||||
BPUM_3515___p 113 CT----ATTATG------------------GCCA------ATTTTAATCA 134
BSNT_01271___ 239 AGGGAACGATT---GACATGAA--CGTGGATGACAATC------TGAAGC 277
| .||.|||| .||||.|| .|||| .|||| | |||||
BPUM_3515___p 135 A--CAAGGATTCTCCACATTAAATGGTGG--TACAA-CGGGCGGTGAAG- 178
BSNT_01271___ 278 CGCTTGGCCTAAA----TGATTATAAAGATCCGGAGTATGATTTGGACAA 323
.||| |||| |.|...|.|| |.|||| ||
BPUM_3515___p 179 ---GTGG--TAAAACCGTCACAGTCAA-AACCGG--------------AA 208
BSNT_01271___ 324 ATATTTGAAAGCCTAT--GATCCTAGCACATG---GGGCAAAAAAGA--- 365
| |||| |||| |.|.||..||.|.| .||.|||||.||
BPUM_3515___p 209 A----TGAA---CTATTGGCTGCTCTCAAAAGTAAAGGAAAAAACGAAAA 251
BSNT_01271___ 366 -------------GCCGTCGGGAACACAAGAAGAAGCGAGAGCACGCTCT 402
|.||.||||| |||...|.|..|||
BPUM_3515___p 252 GTTAAAAATTGTTGTCGACGGGA-------------CGATTACCCCTTCT 288
BSNT_01271___ 403 CAGAAAAA------CCAAAAAGCACGGGTCATGGTG---GATATCCCTGC 443
||.| ||||.||...|| || ||| |||| |
BPUM_3515___p 289 ----AATACATCTGCCAATAAAATCG----AT-GTGAAAGATA------C 323
BSNT_01271___ 444 AAACACGA-----CGATCGTCGGTTCAGGGACTAACGCTAAA-------G 481
||||| | ||||||||||...|||.||.||.|.|.|| |
BPUM_3515___p 324 AAACA--ATGTCTCGATCGTCGGCAAAGGCACGAAAGGTGAATTTAATGG 371
BSNT_01271___ 482 TCGTGGGAGGAAACTTCCAAATCAAGAGTG---ATAACGTCATTATTCGC 528
...|||.|..|||.| || .|.||| |||||.||||.||||||
BPUM_3515___p 372 CATTGGCATTAAAGT-----AT--GGCGTGCCAATAACATCATCATTCGC 414
BSNT_01271___ 529 AACATTG--AATTCCAGGATGCCTATGACTATTTTCCGCAATGGGATCCG 576
||| .|| ||||| ||.| |.|||| .|||.|
BPUM_3515___p 415 AAC-CTGAAAATTC----------ATCA-------CAGCAA---AATCGG 443
BSNT_01271___ 577 ACTGAC--GGAAGC--TCAGGGAACTGGAACTCACAATACGACAACATCA 622
|||| |||.|| || |||| |.|||..|.| |.|.|.|| |
BPUM_3515___p 444 --TGACAAGGATGCCATC--GGAA-TCGAAGGCGC--TTCTAAAA----A 482
BSNT_01271___ 623 CGATAAACGGCGGCACACACATCTGGATTGATCACTGTACA----TTTAA 668
|| ||...|.||.| ||| |.||| |||||||| |||||
BPUM_3515___p 483 CG-TATGGGTCGAC-----CAT----AATGA--ACTGTACAATACTTTAA 520
BSNT_01271___ 669 TGACGGTTCGCGTCCGG-ACAGCACATCACCGAAATATTATGGA------ 711
|| ||.|| |.||...|| |||.|||||
BPUM_3515___p 521 --AC--------TCTGGTAAAGATGAT--------TATGATGGATTATTT 552
BSNT_01271___ 712 ----AGAAAATATCAGCACCATGACGGCCAAACGGATGCTTCCAACGGTG 757
.||||| ||||| |||
BPUM_3515___p 553 GATGTGAAAA----------ATGAC---------------TCC------- 570
BSNT_01271___ 758 CTAACTATATCACGATGTCCTACAACTATTATCACGATCATGATAAAAGC 807
.|||||||.||..|.||.|..|||||| |.||||| |.|||
BPUM_3515___p 571 --GACTATATTACCTTCTCATGGAACTAT------GTTCATG---ACAGC 609
BSNT_01271___ 808 T------CCATTTTCGGATCAAGTGACAGCAAAACCTCCGATGACGGCAA 851
| |.|| |.|||.| |.||| |||.|||.|||.|||
BPUM_3515___p 610 TGGAAAACGAT-----GCTCATG-GGCAG------CTCTGATAACGACAA 647
BSNT_01271___ 852 AT------TAAAAATTACGCTGCATCATAACCGCTATAAAAA----TATT 891
.| .|||||||||..|.||..|.|||||.|.|.|||| .|||
BPUM_3515___p 648 CTACAACCGAAAAATTACATTCCACAACAACCGTTTTGAAAACCTGAATT 697
BSNT_01271___ 892 GTCCAGCGCGCGCCGAGAGTC----CGCTTCGGGCAAGTGCACGTATACA 937
.| ||.|..|| .|| |||||||||.|||..||.||.||.|
BPUM_3515___p 698 CT----CGTGTACC----ATCTATGCGCTTCGGGGAAGGTCATGTGTATA 739
BSNT_01271___ 938 ACAACTATTATGAAGGAAGC---ACAAGCTCTTCAAGTTATCCTTTCAGC 984
|||||||.|||.||||.|.| |||| |..|||.|.| ||.||
BPUM_3515___p 740 ACAACTACTATAAAGGTATCCATACAA---CAGCAATTAA--CTCTC--- 781
BSNT_01271___ 985 TATGCATGGG-----------GAAT----CGGAAAGTCATCT-AAAATCT 1018
|.||||| |||| |..||.|| ||.| |||||
BPUM_3515___p 782 ---GTATGGGCGCAAAAATGAGAATTGAGCACAACGT-ATTTGAAAAT-- 825
BSNT_01271___ 1019 ATGCCCAAAACAATGTCATTGACGTA-CCGGGACTGTCAGCTGCTAAAAC 1067
.||||| ||||..|||| |.| |.|||| ||||.|..||..|
BPUM_3515___p 826 ----ACAAAA-AATGCGATTG--GCAGCTGGGA----CAGCCGTCAAGTC 864
BSNT_01271___ 1068 GAT-CAGCGTAT-TCAGCGGGGGAACGGCT-TTATATGACTCCGGCACGT 1114
|.| ||..|.|| |||.| |||..|| .|||||.|
BPUM_3515___p 865 GGTACATGGCATGTCATC-----AACAACTCATATATTA----------- 898
BSNT_01271___ 1115 TGCTGAACGGCACACAGATCAACGCATCGGCTGCAAACGGGCTGAGCTCT 1164
||||.|| |.||| |.||||.|||| |||
BPUM_3515___p 899 -------------ACAGCTC-AGGCA--GTCTGCCAACG--------TCT 924
BSNT_01271___ 1165 TCTGTCGGCTGG-ACG-----CCGTCTCTGCATGGATCGATTGATGCTTC 1208
||| .|.|| ||| || ||.|.|..|.|.|.| |||
BPUM_3515___p 925 TCT----ACAGGTACGTATAACC----CTCCTTATAACTACT----CTT- 961
BSNT_01271___ 1209 TGCT----------AATGTGAAATC--AAATGTTAT-AAATCAAGCGGGT 1245
|||| |||||.||||| ||.|.|||| |||| ||.|||
BPUM_3515___p 962 TGCTTAACGTGAACAATGTCAAATCAGAAGTATTATCAAAT---GCTGGT 1008
BSNT_01271___ 1246 GCGGGTAAATTAAA---ATAA 1263
|..||.|||.|||| .|||
BPUM_3515___p 1009 GTTGGAAAAGTAAACCCTTAA 1029
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