Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05524 and BPUM_3545

See Amino acid alignment / Visit BSNT_05524 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:08
# Commandline: needle
#    -asequence dna-align/BSNT_05524___ywqH.1.24716.seq
#    -bsequence dna-align/BPUM_3545.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05524___ywqH-BPUM_3545.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05524___ywqH-BPUM_3545.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05524___ywqH
# 2: BPUM_3545
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity:     265/527 (50.3%)
# Similarity:   265/527 (50.3%)
# Gaps:         205/527 (38.9%)
# Score: 556.0
# 
#
#=======================================

BSNT_05524___      1 ATGGGTTATGAAAGTATGC-TAGCGGATATCAAAAG-----TTCGCTCAA     44
                            ||||      || ||.|||||||     |     |.|.||.||
BPUM_3545          1 -------ATGA------GCTTATCGGATAT-----GCTGTCTGCCCTAAA     32

BSNT_05524___     45 CGG-------------AAAAATTTCCGACGTGGAAGACAA----GATCGA     77
                     |||             |||||..| .||..|.|||||.||    |.||||
BPUM_3545         33 CGGTGGCATTACAAGTAAAAAGGT-AGAAATCGAAGAGAAAATCGCTCGA     81

BSNT_05524___     78 AAAGCTGAAAAAAGCAAAA---AAGGACATAGACACAC-TG--CAAGAAG    121
                         ||||||||.||.|||   ||||   |.||   || ||  |||||.|
BPUM_3545         82 ----CTGAAAAAGGCGAAAAGTAAGG---TCGA---ACGTGAACAAGATG    121

BSNT_05524___    122 AGGC--AATCA---CTG----AAATCAA--AG--AAA--TTGTGAAACC-    155
                     .|||  ||.||   |||    |||||||  ||  |||  |||.|  ||| 
BPUM_3545        122 CGGCAGAAACAGACCTGAAGCAAATCAAGCAGCCAAAGCTTGGG--ACCT    169

BSNT_05524___    156 ---GGAATTGGGCAAGCATTGGACGGGAACAAAAGCCGATGATTTCGACA    202
                        ||||               |.|.||.| .||||| |.||||||.|  
BPUM_3545        170 CTTGGAA---------------AGGTGAGC-GAAGCC-AAGATTTCAA--    200

BSNT_05524___    203 AGGGAAGAGAAGAGGCGAAATCGGAAGC-----ATCC-------AAGATT    240
                         |..||||    ||||||  |||||     ||.|       |.||||
BPUM_3545        201 ----ATCAGAA----CGAAAT--GAAGCCCATGATGCGTTGCAAACGATT    240

BSNT_05524___    241 GTGAATGATAAATA-TAACGAGTATATG----GCTTCG-ATTCAAAGCAA    284
                     |||||.|||||.|| ..||| .|||.||    ||.||| |||||||    
BPUM_3545        241 GTGAACGATAAGTACCCACG-CTATGTGAGCCGCATCGAATTCAAA----    285

BSNT_05524___    285 AATATTCTGGCTTGAG-AC---AGAGAAATTTGAGCTGAATTTGACAAAA    330
                        |||        || ||   |||        ||||||     ||||  
BPUM_3545        286 ---ATT--------AGTACGTTAGA--------AGCTGA-----ACAA--    309

BSNT_05524___    331 AGTGCAGCG------------AATGCC---GCAGGCGAC------CTTCT    359
                        ||||||            |.|.||   ||.||.|||      |.|||
BPUM_3545        310 ---GCAGCGTTATCCTTTGCCAGTTCCCTAGCTGGAGACGCCGCACGTCT    356

BSNT_05524___    360 TGCT---AAAGGAGAAGATTTCGTAGAAGAAGCAGGAAGACAAATTAGTA    406
                     ||||   |||||||||||   ||.||    .|.||||.|.||||....|.
BPUM_3545        357 TGCTGAAAAAGGAGAAGA---CGCAG----TGGAGGACGCCAAACGCTTG    399

BSNT_05524___    407 AACT-AAAATGGTGGTGA---------    423
                     |.|| ||||...|||.|.         
BPUM_3545        400 ATCTCAAAAGCATGGAGCAGCTTATAA    426


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