Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03506 and BPUM_3546
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_03506___mleN.1.24716.seq
# -bsequence dna-align/BPUM_3546___mleN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03506___mleN-BPUM_3546___mleN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03506___mleN-BPUM_3546___mleN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03506___mleN
# 2: BPUM_3546___mleN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 1010/1443 (70.0%)
# Similarity: 1010/1443 (70.0%)
# Gaps: 69/1443 ( 4.8%)
# Score: 3335.0
#
#
#=======================================
BSNT_03506___ 1 TTGAAGGATGTAA-------GATTGCCAACACTATTTGAAATTATTATTG 43
|||.|| |..||||..|..|.||.|||.|..|...||
BPUM_3546___m 1 -------ATGAAATCACCACGTCTGCCGTCTATGTTAGAAGTCGTGTCTG 43
BSNT_03506___ 44 TACTAGGAGTATTTTTAGCACTTGTTCTATCGTTTACAGTCTT--TCTCG 91
||||.||..|.|||||||||.|||||.||||.||||| |||| |.||.
BPUM_3546___m 44 TACTTGGCTTGTTTTTAGCAATTGTTTTATCTTTTAC--TCTTTATTTCA 91
BSNT_03506___ 92 ACTTGCCGATA--CAGCTGGCGCTTTTTGTTTCATGGTTTATTGCAATGC 139
|.||| |||| ||.||.||..|.|||.|.|||||||||||.|..||..
BPUM_3546___m 92 AATTG--GATATTCAACTAGCATTGTTTATCTCATGGTTTATGGTTATCG 139
BSNT_03506___ 140 TTTTAGGTATAAGACTCGGTTATTCTTATAAAGATTTACAAAATGCGATT 189
..||||||.|..||.|.||..||||.|||||.|||.|.|||||||||||.
BPUM_3546___m 140 GATTAGGTGTTCGATTGGGGCATTCCTATAAGGATCTTCAAAATGCGATC 189
BSNT_03506___ 190 GTACATGGAATATCAAATGGCCTTGAAGCCGTACTGATTCTCGTTTCAGT 239
..|.|.||.|||||.|||||..|.||||||.|..|.||..|..||.||||
BPUM_3546___m 190 ACAAAAGGGATATCGAATGGTTTAGAAGCCATTTTAATCTTAATTGCAGT 239
BSNT_03506___ 240 TGGGGCGCTCATCGGAACATGGATTGCCGGAGGCGTTGTGCCGACTTTGA 289
.||.||.||..|.||.|||||||||||.||.||.|||||.||.||.||.|
BPUM_3546___m 240 AGGTGCACTTGTTGGTACATGGATTGCAGGTGGGGTTGTACCTACGTTAA 289
BSNT_03506___ 290 TTTATTACGGACTGGAATTTATTCACCCAAGTATCTTTTTACTGGCAACG 339
|.|||||.||..|.||.||||||||.||.|.||||||.|||.|.||.|||
BPUM_3546___m 290 TCTATTATGGTTTAGAGTTTATTCATCCTAATATCTTCTTATTAGCTACG 339
BSNT_03506___ 340 TTAATTATTTGTTCCATTATGTCTGTGGCAACAGGAACGTCATGGGGAAC 389
.|..|.||.|||.|..|.|||||..|.|||||||||||.||.|||||.||
BPUM_3546___m 340 CTTGTCATCTGTGCACTCATGTCCATTGCAACAGGAACCTCTTGGGGGAC 389
BSNT_03506___ 390 AGTCGGAACTGCCGGCATTGCCATGATCGCAATTGGAG-AGGGTTTAGGC 438
.||||||||.||.||.|||||.||||||||||||||.| ||||.|| ||.
BPUM_3546___m 390 GGTCGGAACGGCAGGGATTGCGATGATCGCAATTGGTGAAGGGCTT-GGT 438
BSNT_03506___ 439 ATTCCGCTTCCTCTAGTAGCGGGAGCTATTCTT-TCAGGTGCTTATTTCG 487
|||||.|||||..|.||.||.||.|| ..|||| ||.|||||||||||.|
BPUM_3546___m 439 ATTCCACTTCCGATTGTGGCAGGTGC-CGTCTTATCTGGTGCTTATTTTG 487
BSNT_03506___ 488 GGGACAAGCTGTCTCCGCTGTCTGACAGTACAGTTCTAGCTTCTTCACTA 537
|.||.||..|.||.||..|.||.||.||||||||.||.|||||.|||||.
BPUM_3546___m 488 GAGATAAATTATCCCCATTATCAGATAGTACAGTGCTCGCTTCCTCACTT 537
BSNT_03506___ 538 TCAAAAGTCGATGTATTGGCTCACGTGAGAGCAATGCTTTATTTATCAAT 587
||||||||.||.||..||||.||.||..||||.|||.|...||||||.||
BPUM_3546___m 538 TCAAAAGTGGACGTGCTGGCGCATGTTCGAGCGATGATGGTTTTATCCAT 587
BSNT_03506___ 588 ACCTGCTTATGTCATTACAGCTATACTCTTTACAGTTGTTGGATTTATGT 637
|||.||.|.|||.||.|||||.||..|.|||||.|||...||.|||||||
BPUM_3546___m 588 ACCAGCCTTTGTTATAACAGCCATTATGTTTACGGTTACAGGCTTTATGT 637
BSNT_03506___ 638 ACGGCGGGAAAAATATTGATCTTGATAAAGTTGAATTCTT--AAAATCAT 685
|.||.||....||.|||||||..||||||||.|||||.|| |||||..|
BPUM_3546___m 638 ATGGAGGACGCAACATTGATCAAGATAAAGTAGAATTTTTGAAAAATGCT 687
BSNT_03506___ 686 CTTTGCAAAACACGTTTGACATTC-------ATATTTGGATGCTGATCCC 728
||| ||.|.| |||||| |.|||||||||.|.|||||
BPUM_3546___m 688 CTT-------CATGAT--ACATTCACCATCAACATTTGGATGGTCATCCC 728
BSNT_03506___ 729 GGCAGTTGTCGTCATAGTCTTATTG---GCGATGAAAAAGCCATCTATGC 775
.|||||.||.| |.||.|||.|| |...|.||.||.||.||.||||
BPUM_3546___m 729 AGCAGTAGTGG---TTGTATTACTGCTCGTATTTAAGAAACCTTCAATGC 775
BSNT_03506___ 776 CGGTTATCGTAATTGGCGCTTTACTCGGTGCAATCTGGGCTGTTGTTTTC 825
|.|||||.|..|||||.|||.|..|.||..|.||.|||||..|.|.||||
BPUM_3546___m 776 CTGTTATAGCCATTGGTGCTCTTTTAGGATCTATTTGGGCGATGGCTTTC 825
BSNT_03506___ 826 CAAGGAATGGATATTGCCCATGCGATTGCAACTGCTTACAACGGTTTCTC 875
|||||||||.||...||..|||||||||...|.||.|||||.||.|||||
BPUM_3546___m 826 CAAGGAATGAATCCAGCAGATGCGATTGGTTCAGCATACAATGGCTTCTC 875
BSNT_03506___ 876 TATTAAAACTGATGTTGAATTTTTGA--ACGGCTTGTTAAACCGCGGTGG 923
||||||..|.|||||.||.||.||.| ||| .|||||||.||.|||||
BPUM_3546___m 876 TATTAATTCAGATGTAGATTTCTTAAATACG--CTGTTAAATCGTGGTGG 923
BSNT_03506___ 924 AATTGTCGGTATGCTTGATTCTCTCGTCGTCATCATCTTTGGCCTTGGTT 973
.|||||...||||||||..|||.|.||.|||||.||..|.||.|||||.|
BPUM_3546___m 924 TATTGTAAATATGCTTGGATCTTTAGTGGTCATTATTCTCGGGCTTGGGT 973
BSNT_03506___ 974 TTGGCGGTCTGCTTGAGAAACTCGGCGTGTTAAAAGTCATTGTTTCAACG 1023
||||.||..|.|||||..|.||.|||||..|||||||.||||||||.||.
BPUM_3546___m 974 TTGGTGGCGTACTTGAATATCTAGGCGTTCTAAAAGTAATTGTTTCTACT 1023
BSNT_03506___ 1024 TTTGAAAAGAAATTAACTTCAGCCGGCAATGTCACATTGTCTACACTGAT 1073
|||||.|||||||||..|...||.||.|||||.||..|.||||||||..|
BPUM_3546___m 1024 TTTGAGAAGAAATTATATAATGCAGGAAATGTAACTCTATCTACACTTGT 1073
BSNT_03506___ 1074 CGTAGCGTTTTTAGCGAACATCTTCGGCTGTGCGATGTATGTATCTCTTA 1123
.|||||.||.||.||.||.||.|||||.|||||.|||||.||.||..|.|
BPUM_3546___m 1074 TGTAGCATTCTTTGCAAATATTTTCGGATGTGCAATGTACGTTTCATTAA 1123
BSNT_03506___ 1124 TTTTGACTCCGAAAATTATGGAAGACAGCTATGATCGCTTGCATCTGGAC 1173
||.|.||.|||||.|||||||||.|.|||||.|||...|||.|..|.|||
BPUM_3546___m 1124 TTCTTACACCGAAGATTATGGAAAAAAGCTACGATAAATTGAAAATAGAC 1173
BSNT_03506___ 1174 AGAAGAGTGTTATCACGTAACTCAGAGGTCGGGGGAACATTGACTTCGGG 1223
|||.|.||..||||..|.|||.|.||.|||||.|||||..||||.||.||
BPUM_3546___m 1174 AGACGTGTTCTATCTAGAAACGCTGAAGTCGGTGGAACGATGACGTCTGG 1223
BSNT_03506___ 1224 GATGGTACCTTGGTCTGATAATGGGATTTACATGGCTGGTATTTTAGGTG 1273
.|||||.||||||||.|||||.||||||||.|||||.||.|||.||||.|
BPUM_3546___m 1224 TATGGTTCCTTGGTCAGATAACGGGATTTATATGGCGGGAATTCTAGGCG 1273
BSNT_03506___ 1274 TTTCTACCTTCTCTTATCTGCCGTTTATGTGGCTCAGTTTTGTAGCAATA 1323
|.||.||.|||||||||.|.||.|||||||||.|.||.|||||.||.||.
BPUM_3546___m 1274 TATCCACATTCTCTTATTTACCATTTATGTGGTTGAGCTTTGTGGCCATC 1323
BSNT_03506___ 1324 GGTCTTGCAATTATCTATGGTTATACAGGAAAATTTATATGGTATACG-- 1371
||||||||.|||||.||.||.||||||||.||||||||.||| ||||
BPUM_3546___m 1324 GGTCTTGCTATTATTTACGGATATACAGGGAAATTTATTTGG--TACGTT 1371
BSNT_03506___ 1372 AAAAA--CAATACAGTTA-AAGCCGAAAAACTAGGC----TAA 1407
||.|| ||..||| | ||.|.|||.|| |.||| |||
BPUM_3546___m 1372 AAGAATCCACCACA---AGAATCAGAAGAA-TCGGCTTCATAA 1410
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