Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03508 and BPUM_3548

See Amino acid alignment / Visit BSNT_03508 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:02
# Commandline: needle
#    -asequence dna-align/BSNT_03508___ansA.1.24716.seq
#    -bsequence dna-align/BPUM_3548___ansA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03508___ansA-BPUM_3548___ansA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03508___ansA-BPUM_3548___ansA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03508___ansA
# 2: BPUM_3548___ansA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity:     741/1018 (72.8%)
# Similarity:   741/1018 (72.8%)
# Gaps:          56/1018 ( 5.5%)
# Score: 2641.0
# 
#
#=======================================

BSNT_03508___      1 ATGAAAAAATTATTGATGTTGACAACTGGGGGAACGATTGCTTCAGTTGA     50
                     .||||.|||||||||.|.||.||.|||||.||.||||||||.||.||.||
BPUM_3548___a      1 TTGAAGAAATTATTGCTTTTAACCACTGGTGGGACGATTGCATCTGTAGA     50

BSNT_03508___     51 AGGGGAAAATGGGCTGGCTCCCGGAGTCAAGGCTGATGAATTATTAAGTT    100
                     ..|.||||||||..|||||||.||.||.||.|||||.||..|.|||||.|
BPUM_3548___a     51 GAGTGAAAATGGTTTGGCTCCAGGTGTTAAAGCTGAGGACCTTTTAAGCT    100

BSNT_03508___    101 ACGTATCAA--AACTTGATAACGATTACACAATGGAAACTCAGTCGCTTA    148
                     |  |.|.||  ||.||.||...||.|||||||||||.||..||||.||.|
BPUM_3548___a    101 A--TTTAAACGAAATTAATGCAGAGTACACAATGGACACAAAGTCCCTAA    148

BSNT_03508___    149 TGAATATAGACAGCACCAATATGCAGCCTGAATACTGGGTGGAAATAGCG    198
                     |||.||||||.||.||.|||||||||||||||||||||||.||.||.||.
BPUM_3548___a    149 TGAGTATAGATAGTACAAATATGCAGCCTGAATACTGGGTAGATATCGCA    198

BSNT_03508___    199 GAAGCCGTTAAGGAAAATTATGATGCCTATGACGGGTTTGTTATTACTCA    248
                     ..||||.||.|.||||||||||||...||||||||.||||||.|.||.||
BPUM_3548___a    199 ACAGCCATTTATGAAAATTATGATCAATATGACGGCTTTGTTGTCACGCA    248

BSNT_03508___    249 CGGTACAGATACAATGGCCTATACATCTGCCGCACTATCGTATATGCTGC    298
                     .||.||.||||||||||||||||||||.||.||||||||.||||||||||
BPUM_3548___a    249 TGGAACCGATACAATGGCCTATACATCAGCAGCACTATCTTATATGCTGC    298

BSNT_03508___    299 AGCATGCCAAAAAGCCGATTGTCATCACCGGATCGCAGATTCCGATCACG    348
                     |..||.|..|.|||||.||||||||.||.||.||.||.||.|||||.|||
BPUM_3548___a    299 AAAATCCGGATAAGCCAATTGTCATTACAGGCTCACAAATCCCGATTACG    348

BSNT_03508___    349 TTCCAAAAAACCGATGCTAAAAAAAATATTACAGATGCCATTCGATTTGC    398
                     |||.|.|||||.|||||.||.|||||.||.||.|||||.|||||.|||||
BPUM_3548___a    349 TTCAAGAAAACAGATGCGAAGAAAAACATCACTGATGCGATTCGCTTTGC    398

BSNT_03508___    399 CTGTGAAGGCGTGGGCGGCGTTTATGTTGTATTTGACGGCAGAGTCATTC    448
                     .|||||.|||||.||||||||.||||||||.|||||.||||||||.||||
BPUM_3548___a    399 ATGTGACGGCGTAGGCGGCGTGTATGTTGTCTTTGATGGCAGAGTGATTC    448

BSNT_03508___    449 AGGGAACGCGTGCGATCAAATTAAGAACGAAAAGCTACGACGCATTTGAA    498
                     |.||.||.||.||.||||||||||||||||||||||||||.|||||||||
BPUM_3548___a    449 AAGGGACACGCGCAATCAAATTAAGAACGAAAAGCTACGATGCATTTGAA    498

BSNT_03508___    499 AGCATCAATTACCCATATATCGCTTTTATC-AATGAAGACGGGATC----    543
                     ||.||.||.||.||||||||.||    ||| |.||||.||  .|||    
BPUM_3548___a    499 AGTATTAACTATCCATATATTGC----ATCGATTGAAAAC--CATCAAAT    542

BSNT_03508___    544 -GAATACAACAAACAAGTAACGGAACCTGAGAACG--------ACACCTT    584
                      ||||||||.|...||||||   ||    |||.||        ||..|||
BPUM_3548___a    543 TGAATACAATAGCAAAGTAA---AA----AGATCGTCAATGAAACCGCTT    585

BSNT_03508___    585 CACAGTTGACACCTCACTATGCACAGATGTATGTCTGCTGAAGCTGCATC    634
                      |.|.|.|||.|.||..||..|||.||.||.|||||..||||..||||.|
BPUM_3548___a    586 -AAATTAGACGCATCCTTAAACACCGACGTTTGTCTCTTGAAATTGCACC    634

BSNT_03508___    635 CAGGCTTAAAGCCCGAAATGTTTGATGCCCTGAAAAGCATGTACAAAGGA    684
                     ||||..|||||||.|||.|.||.|||||..|.|||.|..|.||.||||||
BPUM_3548___a    635 CAGGTCTAAAGCCTGAATTCTTAGATGCAATCAAAGGTGTATATAAAGGA    684

BSNT_03508___    685 ATTGTCATTGAGAGTTATGGCAGCGGAGGGGTGCCGTTTGAAGGCAGAGA    734
                     .|.||.||.||.||.||.||||||||.||..|.||.||.|||||.|||.|
BPUM_3548___a    685 GTCGTTATCGAAAGCTACGGCAGCGGCGGAATTCCTTTCGAAGGAAGAAA    734

BSNT_03508___    735 CATTTT-GTCAAAAGTGAATGAGCTGATCGAAAGCGGCATTGTC-GTGGT    782
                     |.|||| |..|||| |.||.||..||.|||||...|||||| || ||.||
BPUM_3548___a    735 CCTTTTAGAGAAAA-TCAACGAATTGCTCGAAGAAGGCATT-TCTGTTGT    782

BSNT_03508___    783 CATTACGACTCAATGTCTTGAAGAAGGCGAAGACATGAGCATTTACGAGG    832
                     |||.||.|||||.||||||||||||||.||||||||||||.|.||.||.|
BPUM_3548___a    783 CATCACAACTCAGTGTCTTGAAGAAGGAGAAGACATGAGCGTGTATGAAG    832

BSNT_03508___    833 TTGGCCGCAGAGTCAACCAAGACTTAATTATCCGATCAAGAAATATGAAC    882
                     |.||.||||.|.||||.|||||..|..|....||.|||.||||.||||||
BPUM_3548___a    833 TAGGACGCAAAATCAATCAAGAACTGGTGGCACGTTCACGAAACATGAAC    882

BSNT_03508___    883 ACAGAAGCAATTGTGCCAAAATTGATGTGGGCGCTAGGTCAGTCTTCGGA    932
                     ||||||||.||.|||||.|||.|.||||||||..|||||.|..|..|.||
BPUM_3548___a    883 ACAGAAGCCATCGTGCCGAAACTCATGTGGGCATTAGGTAAAACAACAGA    932

BSNT_03508___    933 TCTTCCTGTCGTCAAGAGA----------ATTATGGAAACGCCGATAGCT    972
                     .|          |||||||          |||||||||||||||||.||.
BPUM_3548___a    933 CC----------CAAGAGAAGTGAAAAAGATTATGGAAACGCCGATCGCA    972

BSNT_03508___    973 GATGACGTTGTCCTGTAA    990
                     ||.||..|.||..|.|||
BPUM_3548___a    973 GAAGATTTAGTGATTTAA    990


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