Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03509 and BPUM_3549

See Amino acid alignment / Visit BSNT_03509 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:02
# Commandline: needle
#    -asequence dna-align/BSNT_03509___ansR.1.24716.seq
#    -bsequence dna-align/BPUM_3549___ansR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03509___ansR-BPUM_3549___ansR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03509___ansR-BPUM_3549___ansR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03509___ansR
# 2: BPUM_3549___ansR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity:     238/394 (60.4%)
# Similarity:   238/394 (60.4%)
# Gaps:          89/394 (22.6%)
# Score: 687.5
# 
#
#=======================================

BSNT_03509___      1 ATGAATCTAGATCGTTTAACTGAAT-TGAGAAAAAAGAAAAATTGGTCGC     49
                     ||||..||.||||||||||| .|.| |.||||||||||||||.|||||.|
BPUM_3549___a      1 ATGATACTCGATCGTTTAAC-CACTCTTAGAAAAAAGAAAAAATGGTCTC     49

BSNT_03509___     50 TTCAATATACAGCTGACCTTCTCGGTATCGCAAAAAGCACATATGCCGGC     99
                     |.||..||||.||.||.|..||.||||||||.||||||||.||||||||.
BPUM_3549___a     50 TCCAGCATACGGCAGATCGCCTAGGTATCGCCAAAAGCACCTATGCCGGT     99

BSNT_03509___    100 TACGAGTCAGGCTACCGACGGCCTTCACTTGAAGC------GCTTGCCAT    143
                     |||||.||.||.||||||||.|||||.||||||||      ||  ||   
BPUM_3549___a    100 TACGAATCTGGGTACCGACGACCTTCGCTTGAAGCAGTGAAGC--GC---    144

BSNT_03509___    144 GCTGGCTGACCTCTTTGACACAACCTGCGA-TGAACTTTTA---------    183
                      ||||||||..|.|.|||.||..||    | |||..|||||         
BPUM_3549___a    145 -CTGGCTGATTTGTATGATACGTCC----ATTGATTTTTTACTTGGTAGA    189

BSNT_03509___    184 --GGCCG----CGAGAAAC-----AAAAGCAGACTGCTCCTCAGGCCAT-    221
                       ||.||    .||||.||     ||||.|  .|||.|         || 
BPUM_3549___a    190 ACGGACGAGCCAGAGATACAACGTAAAATC--TCTGAT---------ATC    228

BSNT_03509___    222 AGAATTGGCC--ACGTGGAGC------AGCCTTGACTTTACCATTTCTGT    263
                     |.|||||..|  ||| |.|||      ||    ||    ||||||..|||
BPUM_3549___a    229 AAAATTGAACTGACG-GAAGCAAAAGAAG----GA----ACCATTCTTGT    269

BSNT_03509___    264 TGATGGCCAGCCGCTGAGTGAAGATGAAATCATCCAGCTGATTACCTTTA    313
                     .||.||....||.||.|.|||.||.|||||||..|||||..||.||||||
BPUM_3549___a    270 AGACGGTGTTCCCCTAAATGATGAAGAAATCAAACAGCTTGTTGCCTTTA    319

BSNT_03509___    314 TACGCACAAAAA------GAAAAGTACAGGAGGAACTGAGTTAA    351
                     |.||..|.||||      .|||||||               |||
BPUM_3549___a    320 TTCGGGCGAAAAACACCCTAAAAGTA---------------TAA    348


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