Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05955 and BPUM_3555
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_05955___pepT.1.24716.seq
# -bsequence dna-align/BPUM_3555___pepT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05955___pepT-BPUM_3555___pepT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05955___pepT-BPUM_3555___pepT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05955___pepT
# 2: BPUM_3555___pepT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1287
# Identity: 876/1287 (68.1%)
# Similarity: 876/1287 (68.1%)
# Gaps: 108/1287 ( 8.4%)
# Score: 2857.5
#
#
#=======================================
BSNT_05955___ 1 ATGAAAGAAGAAATCATTGAACGGTTTACTACATATGTAAAAGTCGACAC 50
||||||||||||||.|||.|.||.||.||.|..|||||.||.||.||.||
BPUM_3555___p 1 ATGAAAGAAGAAATGATTCAGCGATTCACAAGTTATGTGAAGGTAGATAC 50
BSNT_05955___ 51 ACAGTCCGATGAATCAGTT---GACACTTGTCCTTCCACACCCGGCCAAT 97
||||||.|||| |||.| ||.|.|||.||.||.||....||.||.|
BPUM_3555___p 51 ACAGTCGGATG---CAGATAAGGAAAGTTGCCCATCAACTGAAGGACAGT 97
BSNT_05955___ 98 TGACATTAG-GAAACATGCTCGTTGATGAATTGAAGTCAATCGGCATGCA 146
|||..|||| .|.||| .||.|||||.|||.||||.||.|||||.||.||
BPUM_3555___p 98 TGAACTTAGCTAGACA-ACTAGTTGAAGAAATGAAATCCATCGGGATTCA 146
BSNT_05955___ 147 GGATGCAGCCATTGATGAAAACGGCTATGTCATGGCAACTCTTCCCTCCA 196
.||.|.|.|.||.|||||||||||.||||||||||..||..|.||.||.|
BPUM_3555___p 147 AGAAGTAACAATGGATGAAAACGGATATGTCATGGGGACGATCCCGTCTA 196
BSNT_05955___ 197 ATACTGAAAAAGACGTGCCGACAATCGGTTTTCTCGCTCACGTCGACACC 246
|.||.||.||||||||||||||.||.||.||.||.||||||.|||||||.
BPUM_3555___p 197 ACACAGACAAAGACGTGCCGACTATTGGCTTCCTGGCTCACATCGACACA 246
BSNT_05955___ 247 GCTACAGACTTTACCGGCAAAAACGTGAATCCGCA-AATCATCGAAAGCT 295
||.||.|||||.|||||.|||||.||.||.||||| ..|||| ||||.||
BPUM_3555___p 247 GCGACTGACTTCACCGGAAAAAATGTAAAACCGCAGCTTCAT-GAAAACT 295
BSNT_05955___ 296 ATGATGGAAAAGACATCGTTCTT-AACGAAAAGCTGCAGGTC-------- 336
||.|.||....|||||| ..||| ||.|||.|..|.||..||
BPUM_3555___p 296 ATCAAGGCGGCGACATC-ACCTTAAATGAAGATTTACATATCGTTTTATC 344
BSNT_05955___ 337 ----ACCCTGTCACCTGATCAATTCCCTGAGCTGTCTGGCTATAAGGGCC 382
||.|.||..||..|| ||.|...|| |||.|.||.|
BPUM_3555___p 345 TCCAACACAGTTTCCAAAT---TTACAAAAG---------TATCAAGGAC 382
BSNT_05955___ 383 ATACACTCATCACCACAGACGGCACCACCCTTCTCGGCGCAGACAATAAG 432
||||.||.|||||.|||||.|||||.|||.|.||.||.||.||.||.||.
BPUM_3555___p 383 ATACGCTAATCACAACAGATGGCACAACCTTACTTGGTGCGGATAACAAA 432
BSNT_05955___ 433 GCCGGTATCGCTGAAATCATGACAGCCATGGATTACCTCATCAAACACCC 482
||.||||||||.|||||.|||||.||.|||.|||||.|.||..|.||.||
BPUM_3555___p 433 GCAGGTATCGCAGAAATTATGACCGCTATGCATTACTTAATTGAGCATCC 482
BSNT_05955___ 483 TGAAATCAAGCACGGTACAATCAGAGTCGCCTTTACGCCTGATGAAGAAA 532
.|||||||||||.||.|.|||..|.|||||||||||.||.||||||||.|
BPUM_3555___p 483 AGAAATCAAGCATGGCAAAATTCGCGTCGCCTTTACACCAGATGAAGAGA 532
BSNT_05955___ 533 TCGGAAGAGGGCCGCACAAATTTGATGTGAAACGGTTCAATGCTTCCTTT 582
|.||.||||||||||||||||||||||||.||...||....|||||||.|
BPUM_3555___p 533 TTGGCAGAGGGCCGCACAAATTTGATGTGGAAGCCTTTGGCGCTTCCTAT 582
BSNT_05955___ 583 GCCTACACGGTTGACGGCGGGCCTCTCGGCGAGCTTGAATACGAAAGCTT 632
||.||.||..|||||||.||.||.|||||.|||||..||||.||||||||
BPUM_3555___p 583 GCGTATACAATTGACGGAGGACCACTCGGGGAGCTGCAATATGAAAGCTT 632
BSNT_05955___ 633 CAATGCCGCTGCCGCAAAAATTACGATTAAAGGCAACAACGTACATCCCG 682
.||.||.||.|..||.|||.|..|.||||||||.|||||.||.||.||.|
BPUM_3555___p 633 TAACGCAGCAGGTGCGAAAGTATCAATTAAAGGAAACAATGTCCACCCTG 682
BSNT_05955___ 683 GAACAGCTAAAGGGAAAATGATCAACTCTGCGAAAATCGCGATGAAGCTG 732
|.|||||.||||..||||||.|||.|.|||||||.||.|.||||....|.
BPUM_3555___p 683 GGACAGCAAAAGACAAAATGGTCAGCGCTGCGAAGATTGGGATGCTCTTC 732
BSNT_05955___ 733 AACAGCCTGCTGCCGGCAGACGAAGCGCCTGAATATACGGAAGGCTATGA 782
.|||.|..|||.||..|.||.|||.|.||.|||||.||.|||||||||||
BPUM_3555___p 733 CACAACAAGCTACCATCTGATGAATCACCGGAATACACAGAAGGCTATGA 782
BSNT_05955___ 783 AGGCTTCTACCACTTGCTGTCGA---TTCAAGGAGACGTAGAGGAAACAA 829
|||.||.|.||| .||..||| ||..||||||.||.||.|||.||.
BPUM_3555___p 783 AGGGTTTTTCCA---TCTCACGAAGTTTGTAGGAGAAGTCGAAGAAGCAG 829
BSNT_05955___ 830 AGCTCTACTACATTATTAGAGACTTTGACAAAGAGAATTT--------CC 871
||||..|.||.||||||.|.||.|||||.|||||.||.|| .|
BPUM_3555___p 830 AGCTTCAATATATTATTCGTGATTTTGATAAAGACAAATTTAACGATCGC 879
BSNT_05955___ 872 AAAACA------GAAAAGAAACAATGAAGC--GTGCCGTTGAAGAACTTC 913
|||.|| ||||| ||| ||| ||| ||||.
BPUM_3555___p 880 AAAGCACTATTTGAAAA-----AAT--AGCAAGTG----------ACTTA 912
BSNT_05955___ 914 AAAACGA-ATACGGGCAAGACCGGATTCTGCTGGATATGAACGACCAATA 962
|||.|.| .|||||..||.||.|.||....||..|.||..|.||.|||||
BPUM_3555___p 913 AAAGCCATTTACGGAGAAAACAGCATCAATCTCAAAATTCAAGATCAATA 962
BSNT_05955___ 963 CTACAACATGAGAGAGAAAATTGAACCTGTCATCGAA----ATCGTCAAC 1008
.||.||.||||||||.||||||||.||.|| ||| ||.||..|.
BPUM_3555___p 963 TTATAATATGAGAGAAAAAATTGAGCCGGT----GAAACACATTGTGGAT 1008
BSNT_05955___ 1009 ATTGCCAAGCAAGCAATGGAAAACCTCGGCATTGA--------ACCGAAG 1050
||||||.|..|||||||||||||||.| .||.||| |.||||
BPUM_3555___p 1009 ATTGCCCATGAAGCAATGGAAAACCGC-TCAGTGACACCTGTGATCGAA- 1056
BSNT_05955___ 1051 ATTTCCCCCATCCGCGGCGGCACCGACGGATCGCAACTGTCCTACATGGG 1100
||.|||||||||||.||.||.||.||.||.||.||.||.|..||
BPUM_3555___p 1057 ------CCAATCCGCGGCGGTACAGATGGCTCCCAGCTTTCATATAAAGG 1100
BSNT_05955___ 1101 GCTTCCGACGCCAAACATCTTTACAGGCGGGGAAAACTTCCACGGCAAAT 1150
.|||||.|||||||||||||||||.||||||||||||||||||||.||||
BPUM_3555___p 1101 TCTTCCAACGCCAAACATCTTTACTGGCGGGGAAAACTTCCACGGTAAAT 1150
BSNT_05955___ 1151 TTGAATACATCTCAGTTGATAATATGGTCAAAGCCGTAAATGTCATCGTT 1200
.|||||..||.||.||.||.||.|||||.|||||...|.|.||.|||||.
BPUM_3555___p 1151 ATGAATTTATTTCTGTCGAGAACATGGTGAAAGCAACAGAAGTTATCGTA 1200
BSNT_05955___ 1201 GAGATTGCAAAGCAG----TTTGAAGCGCAAGCCTAA 1233
||.||.|| |.| |||||||...||||.||.
BPUM_3555___p 1201 GAAATCGC----CCGTTTATTTGAAGAAAAAGCATAG 1233
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