Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05975 and BPUM_3557

See Amino acid alignment / Visit BSNT_05975 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_05975.1.24716.seq
#    -bsequence dna-align/BPUM_3557.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05975-BPUM_3557.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05975-BPUM_3557.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05975
# 2: BPUM_3557
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 790
# Identity:     434/790 (54.9%)
# Similarity:   434/790 (54.9%)
# Gaps:         215/790 (27.2%)
# Score: 936.0
# 
#
#=======================================

BSNT_05975         1 ---------------ATGA-AATGGAATAAAATG-CTGAAAGCTGCGGGG     33
                                    |||| ||||  |.||||.| ||.|.|         
BPUM_3557          1 ATGGGGGTTTTTACTATGACAATG--AAAAAAGGCCTAACA---------     39

BSNT_05975        34 ATTGCAGTCT--------------TGTTTTTTTCCGTATTAGC-------     62
                     ||  ||||||              ||.||.||||..|.||.||       
BPUM_3557         40 AT--CAGTCTGCTCATTTTTTCACTGATTGTTTCGTTGTTTGCGCCAGTT     87

BSNT_05975        63 --ATATGCG---GCCCCATCTTTAAAAGCAGTTCAAGCGAAAACACCGAC    107
                       ||.||||   |||         |||      |||||.||||.|.|||.
BPUM_3557         88 GGATCTGCGGATGCC---------AAA------CAAGCAAAAAAAGCGAA    122

BSNT_05975       108 TGTCAGCACCCATACGTACAAAAAGATCAAGGAGTTAACGTATCCACAAG    157
                     .||.|||||.|||...||.|||||||..||...|||.|..|||.||||.|
BPUM_3557        123 AGTAAGCACACATTATTATAAAAAGAAAAAAACGTTTAAATATGCACAGG    172

BSNT_05975       158 TGCATCACATCGGGAATGCCGCGTTTGAAAAGAAAATCAATCAAGAGCTG    207
                     ||.|..||.|..|.|| |.|||.|.|||||  |..|||||||..||..|.
BPUM_3557        173 TGAAAAACCTAAGTAA-GGCGCATATGAAA--ACCATCAATCGTGATTTA    219

BSNT_05975       208 AAAGCCTACATTGAACAATCGTA------TCAGGAATATCTGAAA-AACA    250
                     ||||...||||.|.|...||.||      |.|...||| ||.||| .||.
BPUM_3557        220 AAAGAAGACATCGCATTCTCTTATTCTACTTATTTATA-CTTAAAGGACG    268

BSNT_05975       251 AAAAAGCAGGCG-AACAGCAGGGCTTTAAAACGGAATATC-------GAA    292
                     ||       ||| ||.||.|.||||||    .||||.|||       .||
BPUM_3557        269 AA-------GCGAAAAAGGATGGCTTT----GGGAAGATCACGTACGAAA    307

BSNT_05975       293 CATCCTT--CAGCGTCAAAT---ACAATGCGGCAGGCAAGCTCAGCAT-T    336
                     .|||.||  .|.||  ||||   |||||| ||.||  ||.|||||.|| |
BPUM_3557        308 GATCGTTTAAAACG--AAATTTAACAATG-GGAAG--AAACTCAGTATCT    352

BSNT_05975       337 CAAAC-------AC-TCAATTAT-----ATCTATTCAGGCGGCG--CCCA    371
                     .||||       || |.|||.||     |   ||.||  |||||  .|.|
BPUM_3557        353 TAAACTATGATTACATGAATGATGGTGGA---ATGCA--CGGCGATACGA    397

BSNT_05975       372 CGGTTTAACGTCTGTCCAGTCCTTCAACTATGACTTG-----------AA    410
                     .||||         |||||  |.|.|||||||   ||           ||
BPUM_3557        398 TGGTT---------TCCAG--CATGAACTATG---TGCTAACGAAGAAAA    433

BSNT_05975       411 AGCACAAAAGCGGGTGACGCTGGAGCAGA--TTCTGAGCACCAAAACAAA    458
                     || || |||||..|| |..||.|| ||||  ||.|||..||  |||.|||
BPUM_3557        434 AG-AC-AAAGCAAGT-ATTCTTGA-CAGACGTTGTGAAAAC--AAAGAAA    477

BSNT_05975       459 AGTCAGC-----AAAACGAGAGATTACCTATATAGCTATATCAAA-AAAC    502
                     |   |||     |||...||||||||..|.||||.|||.| |||| ||||
BPUM_3557        478 A---AGCGTACGAAAGTAAGAGATTATATTTATAACTACA-CAAAGAAAC    523

BSNT_05975       503 ACGATGAGCTGTTTTT------CCCTGATGTAAAGAAAGAG-----GATA    541
                     | .|.||||...||.|      .||||    |||.||||||     ||.|
BPUM_3557        524 A-TAAGAGCAAATTCTATGCGAACCTG----AAAAAAAGAGACATTGAAA    568

BSNT_05975       542 T-AACCCTA-AACAAAGACACAATGTTTTACTTTACGGCAAACGGAATCG    589
                     | ||  ||| |||    ||.||  ||.||||||||||..|||.|||||.|
BPUM_3557        569 TCAA--CTACAAC----ACGCA--GTATTACTTTACGAAAAAGGGAATTG    610

BSNT_05975       590 CTATCGTCTTTGGCCAG---TATGACTTGGGGCCT---TATGCAGCGGGA    633
                     ||.|.|||||   ||||   |||||..|....|||   ||||.|  ||||
BPUM_3557        611 CTGTTGTCTT---CCAGCCATATGAGATTTCACCTTACTATGTA--GGGA    655

BSNT_05975       634 ATCCGGGATG-TGCAGGTGCCAGCCTCTATTTATCAATAA    672
                     ..||||  || |.||.||.||.||.....|.|||.|||||
BPUM_3557        656 TACCGG--TGATTCAAGTTCCTGCGAAAGTATATAAATAA    693


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