Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05982 and BPUM_3567

See Amino acid alignment / Visit BSNT_05982 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_05982___licT.1.24716.seq
#    -bsequence dna-align/BPUM_3567___licT1.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05982___licT-BPUM_3567___licT1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05982___licT-BPUM_3567___licT1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05982___licT
# 2: BPUM_3567___licT1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 891
# Identity:     587/891 (65.9%)
# Similarity:   587/891 (65.9%)
# Gaps:         114/891 (12.8%)
# Score: 1795.0
# 
#
#=======================================

BSNT_05982___      1 ATGAAAATTGCGAAGGTGATCAACAATAATGTGATCA--GCGTGGTCAAT     48
                     .|||..|||.||||.||.|||||.|||||||||.|||  ||||     ||
BPUM_3567___l      1 TTGATCATTTCGAAAGTAATCAATAATAATGTGGTCAGTGCGT-----AT     45

BSNT_05982___     49 GA--AC-AGGGGAAAGAATTGGTCGTCATGGGCAGGGGGCTCGCGTTTCA     95
                     ||  || ||..|.|.||..|.|||.|.||||||||.||..||||.|||||
BPUM_3567___l     46 GATGACGAGCAGCATGAGCTAGTCATTATGGGCAGAGGAATCGCTTTTCA     95

BSNT_05982___     96 GA--AAAAGTCCGGCGAT--GA-TGTCGATGAAGCCCGCATTGAGAAAGT    140
                     .|  ||||||  ||.|||  || ||.|||.|||   ||.|||||.|||||
BPUM_3567___l     96 AAAGAAAAGT--GGAGATCCGATTGACGAAGAA---CGTATTGAAAAAGT    140

BSNT_05982___    141 GTTCACGCTCGAT----AACAAGGATGTATCAGAAAAGTTCAAAACCCTT    186
                     .||    .||.||    ||.||.|||.||||||||||.|||||||||||.
BPUM_3567___l    141 ATT----TTCCATTCAAAATAAAGATATATCAGAAAAATTCAAAACCCTG    186

BSNT_05982___    187 TTGTATGATATACCGATCGAGTGTATGGAAGTATCCGAAGAGATT----A    232
                     .|.||||||||.||.|||||||.||||.||||.|..||.|.||||    |
BPUM_3567___l    187 CTTTATGATATTCCAATCGAGTATATGCAAGTGTGTGAGGCGATTATTGA    236

BSNT_05982___    233 TCAGCTACG----CAA-----AATTACAGCTCGGCAAAAAGCTCAACGAC    273
                     |||  |.||    |||     |||           |||||..|.||.|||
BPUM_3567___l    237 TCA--TGCGAGAACAACCCTTAAT-----------AAAAATTTAAATGAC    273

BSNT_05982___    274 AGCATCTATGTGTCGCTGACCGACCATATTAACTTTGCCATCCAGCGCAA    323
                     ||.|||||||||.|.|||||.||.|||||.|.||||||.||..|.||..|
BPUM_3567___l    274 AGTATCTATGTGACACTGACGGATCATATCACCTTTGCTATTGAACGTCA    323

BSNT_05982___    324 CCAGAAAGGGCTTGATATCAAAAACGCCTTGCTGTGGGAAACAAAACGGC    373
                     .||.|||||..|.||.||||||||.||..||||.|||||||..||.|||.
BPUM_3567___l    324 TCAAAAAGGTATGGACATCAAAAATGCTCTGCTCTGGGAAATTAAGCGGT    373

BSNT_05982___    374 TGTACAAAGACGAATTTGCGATCGGCAAAGAAGCGTT---GGTTAT---G    417
                     ||||||||||.||.|||..|...||...|||||||.|   |.||||   |
BPUM_3567___l    374 TGTACAAAGATGAGTTTATGTGTGGTGTAGAAGCGCTTCGGATTATTCAG    423

BSNT_05982___    418 GTAAAAAACAAGACAGGTGTGTC-TCTGCCAGAGGATGAAGCAGGCTTTA    466
                     |      |||||...|.|.| || |||.||.|||||||||||.||.||||
BPUM_3567___l    424 G------ACAAGCTCGATAT-TCATCTTCCTGAGGATGAAGCCGGTTTTA    466

BSNT_05982___    467 TTGCTCTGCATATTGTAAATGCCGAGCTGAATGAAGAGATGCCCAATATT    516
                     ||||..||||.|||||.|||||.||.||.||||||||.|||||.||..|.
BPUM_3567___l    467 TTGCGATGCACATTGTCAATGCAGAACTCAATGAAGAAATGCCGAACGTG    516

BSNT_05982___    517 A-TCAACATTACAAAAGTCATGCAAGAGATTTTGAGTATTGTAAAATACC    565
                     | |||| |||||.|||.||||.|||||.|||||.|.|||.||.||.||.|
BPUM_3567___l    517 ATTCAA-ATTACCAAACTCATTCAAGATATTTTAAATATCGTTAAGTATC    565

BSNT_05982___    566 ATTTTAAGATTGAATTCAACGAAGAATCGCTTCACTATTATCGGTTCGTC    615
                     |.|||.|.|||||.||..||||.|||||..|..||||||..||.||.|||
BPUM_3567___l    566 ACTTTCAAATTGATTTAGACGAGGAATCATTAAACTATTTCCGATTTGTC    615

BSNT_05982___    616 ACCCACTTAAAATTTTTCGCGCAACGTCTATTTAACGGCACTCACATGGA    665
                     ||.||.|||||.|||||.|..||.|||||.|||||||..||.||.|||||
BPUM_3567___l    616 ACGCATTTAAAGTTTTTTGGACAGCGTCTTTTTAACGAAACACAAATGGA    665

BSNT_05982___    666 AAGCCAGGACGATTTTTTGCTGGATACA---GTGAAAGA-AAAGTATCAT    711
                     ||..||..|.||.|||   |||.||..|   ||.||||| |||  |.||.
BPUM_3567___l    666 AAATCAAAATGAATTT---CTGTATGAAGTCGTAAAAGAGAAA--AACAC    710

BSNT_05982___    712 CGC-GCGTATGAATGCACGAAGAAAATCCAAACCTACATTGAGCGGGAGT    760
                     .|| ||.|...||||..|..|||||||  .|||             ||.|
BPUM_3567___l    711 TGCAGCTTTCCAATGTGCTGAGAAAAT--TAAC-------------GATT    745

BSNT_05982___    761 ATGAGCACAA---------------GCTCACAAGTGACGAGCTGCTGTAT    795
                     |||..||.||               .||||.|...||.|||.||||||||
BPUM_3567___l    746 ATGTTCAAAAAGAATACAACCGAAGCCTCATAGAAGATGAGATGCTGTAT    795

BSNT_05982___    796 TTAACCATTCACATAGAAAGGGTAGTTAAACAAG--CATAA    834
                     |||||..|.||.||.||.||.|| |.|||| |||  .||||
BPUM_3567___l    796 TTAACTTTGCATATCGACAGAGT-GATAAA-AAGAAAATAA    834


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