Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00949 and BPUM_3568
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:38
# Commandline: needle
# -asequence dna-align/BSNT_00949.1.24716.seq
# -bsequence dna-align/BPUM_3568.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00949-BPUM_3568.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00949-BPUM_3568.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00949
# 2: BPUM_3568
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1572
# Identity: 842/1572 (53.6%)
# Similarity: 842/1572 (53.6%)
# Gaps: 435/1572 (27.7%)
# Score: 1804.5
#
#
#=======================================
BSNT_00949 1 ATGT--TCCACAC-------------AAGAAACTCTTCTCAA--AACACA 33
|||| ||.|.|| |||||| |||| |
BPUM_3568 1 ATGTTATCGAAACGTGAAGAAGAAAGAAGAAA------TCAATTA----- 39
BSNT_00949 34 GCCGAATTTGTTCTGCTT--GACCAACTCGT---TGAAGAGGATCACCTG 78
|||.|.|| .|||| ||..||.|.|| |||| |||||.||.
BPUM_3568 40 ---GAAGTAGT--GGCTTTAGATGAATTAGTGCCTGAA---GATCATCTT 81
BSNT_00949 79 CTTCGGAAAATTG-ATAAACACATAGACTTCTCTTTCATCATTGAAAAGG 127
.|.|||||||||| |.||.|| ||.||.|||..||||||...|||....|
BPUM_3568 82 GTGCGGAAAATTGAACAAGCA-ATCGATTTCGATTTCATTTATGATCTTG 130
BSNT_00949 128 TGAAACCTTACTACAG---TGAAAA--------CAAAGGCCGCCCCTCAC 166
|.|||..|.|.||.|| |||.|| |||..|
BPUM_3568 131 TCAAAGATCATTATAGTTCTGATAATGGTAGACCAAGTG----------- 169
BSNT_00949 167 TTGATCCGCTTATTTTATTTAAAATGATGTTTATCGGATACCTCTATGGT 216
|||||||..||.||.|..||||.|||.|.||.|||..|||.||.|.|||.
BPUM_3568 170 TTGATCCTGTTGTTCTCATTAAGATGGTCTTAATCCAATATCTATTTGGC 219
BSNT_00949 217 ATCCGTTCAGAAAGACA-GCTTGAA------AAAGAAATTTACTACAATA 259
||.||.|| || ||.|.|| |||||||||.|...||||.
BPUM_3568 220 ATTCGCTC-------CATGCGTCAAACCATTAAAGAAATTGAAACCAATG 262
BSNT_00949 260 TGGCGTACAGATGGTTTCT------CGGATT---GAACATAAACGACCCG 300
||||.||..|.||||||.| .||||| |.|.|.||
BPUM_3568 263 TGGCTTATCGTTGGTTTATTGGGTATGGATTTTCGGAGAAAA-------- 304
BSNT_00949 301 GTTCCACACCACTCCACCATCAGCTGGAACAGAC-----GCACACGCTTT 345
||||.|||...||.|||.|| ||.|.|.|| | |.||||||.
BPUM_3568 305 -TTCCGCACTTTTCTACCTTC----GGTAAAAACTACGTG-AGACGCTTC 348
BSNT_00949 346 AAAGATACAACCATCTTCCAAGACATTTTTGATGAGATCG-TTCTTCAG- 393
.|.||||||....|.|||.||.|.|||||| .|||| .||||.||
BPUM_3568 349 CACGATACAGATTTATTCGAACAAATTTTT-----TATCGAATCTTAAGA 393
BSNT_00949 394 ---GCCATCAATCATGACATGGTGGGCG--GACGAGTCCTA-----TTCA 433
||.||.|| |.|.|| |..|| |||..|| ||| ||||
BPUM_3568 394 GAAGCGATGAA-----AAAAGG-GCTCGTTGACCCGT-CTATCGCCTTCA 436
BSNT_00949 434 CCGACTCCACACACCTTAAAGCCAATGCCAACAAGCATAAA-TACACAAG 482
..||.||.||.||..|.|||||.||.|||||.|||.|.||| |..|.|||
BPUM_3568 437 TTGATTCGACTCATGTCAAAGCGAACGCCAATAAGAAAAAACTTGAAAAG 486
BSNT_00949 483 AAAAAC-----AATTGCG-CAGGA---TACCCAAAACTATATCAAGGATT 523
||||.| |.|||.| ||.|| ||.|.|| |||| |.||
BPUM_3568 487 AAAATCGTTCGAGTTGAGACAAGAAGTTATCAAA------ATCA--GCTT 528
BSNT_00949 524 TAAATGAAGCCATTCAAGA-GGATCGGGAGGAACACGGAAAAAAACCATT 572
.||||||..| ||||.| .|||||.||.|||||.||||||||.||.||
BPUM_3568 529 --CATGAAGAGA-TCAATATTGATCGTGAAGAACATGGAAAAAAGCCCTT 575
BSNT_00949 573 A-----ACAG-CCAAAGAGGAGGTGAAAGCTGAAAAAGAGATCCGCCA-- 614
| |||| ..||||| .|||| .||||||.|| ||
BPUM_3568 576 ACCCCTACAGAATAAAGA-----AGAAA----CAAAAGAAAT----CAAG 612
BSNT_00949 615 --CAGTACAACCGATCCGGAAAGTGGCTA-TCTGT--------ATCGTGA 653
|||||||||.||.||.||.|||||||| |.||| |.|||||
BPUM_3568 613 GTCAGTACAACTGACCCAGAGAGTGGCTATTATGTAAAGGATGAACGTGA 662
BSNT_00949 654 AAA--CAAACCAGAAGGTTTTTTC-TATTTAGATCACCGCACAACAG-AT 699
||| || |||.| ||||.|..||| .|||| .|
BPUM_3568 663 AAAGTCA------------TTTGCTTATTCATTTCA------TACAGCGT 694
BSNT_00949 700 ATGAAATACAACA----TTAT------CACCGATGCCTACGTCACACCTG 739
.|| ||.|||.| |||| | .||.|| ||||||...|
BPUM_3568 695 GTG--ATTCAAAAGGATTTATTTTAGGC-TCGCTG-----GTCACAGGCG 736
BSNT_00949 740 GAAATGTCCATGATTCTGTGCCTTATCTTGACCGATTAGACCAC------ 783
|||||||.|||||| .|.|.|||.||| |||| |||
BPUM_3568 737 GAAATGTTCATGAT----AGTCGTATGTTG---GATT----CACTCGTAT 775
BSNT_00949 784 CAAATCGCAC---GATTTGGTTTTCAAGTAG--AAGCC-------GTCGC 821
||||....|| || ||||.| ||.|| |||||
BPUM_3568 776 CAAAAGTGACAGAGA----------AAGTCGGAAAACCAAATGTAGTCGC 815
BSNT_00949 822 CCTTGATTCCGGATATTTAACGACTCCGATCTGTAAAGGATTATCTGAC- 870
..|.|||.|.||.|||..||| |.||.||
BPUM_3568 816 AGTAGATGCGGGGTATAAAAC---------------------ACCTTACA 844
BSNT_00949 871 -CGCCAA-ATCTT--TGGTGTCATC--GCACAT-AGAC--GTTATCACCC 911
|||.|| .|||| ||| ||| | |.|| |||| ||.|| .|||
BPUM_3568 845 TCGCTAAGTTCTTAATGG----ATCAAG-AGATAAGACCTGTCAT-GCCC 888
BSNT_00949 912 TA------TCCGAG----------GCTTGTTTCCAAAATGGAA--ATTTC 943
|| |||.|| |.||.|||..|||| ||| |.|.|
BPUM_3568 889 TACACTCGTCCAAGAACAAAAGCTGGTTATTTGAAAAA--GAATGAATAC 936
BSNT_00949 944 AT-TATGACAGTGAACA---AGACAGATACATTTGTCCAAATCACCAAA- 988
.| ||||| ||.|.| .||..|.||||||||.||.||....||||
BPUM_3568 937 GTATATGA---TGCATATTTTGATTGTTACATTTGCCCCAACGGGCAAAT 983
BSNT_00949 989 ---CACTTA-CATACTCAACAACTGACCGAAAAGGCTACCGGTCATATAA 1034
|.|||| |.|| ||||.||| .||.|||||||...|..||||..
BPUM_3568 984 TCTCTCTTATCGTA--CAACGACT---AGAGAAGGCTATAAGCAATATGT 1028
BSNT_00949 1035 ATCAAATCCTGAAATATGTTCCTCATGCCCACTGCTTGAAAACTGTA--C 1082
|||..||.|.|||.|||||...||.|||.|..|..|.||.||||||| |
BPUM_3568 1029 ATCCGATTCAGAAGTATGTGAGTCCTGCTCGTTTTTAGATAACTGTACCC 1078
BSNT_00949 1083 AAAATCAAAGAATCGGCA-GAAAGTGATTACTCGACATGTATGGGAAGAT 1131
|||.||| ||.|..|| .|||...|||..|||.|||.|.|||.|.|||
BPUM_3568 1079 AAAGTCA---AAACCACACCAAACAAATTCATCGGCATATTTGGCAGGAT 1125
BSNT_00949 1132 CATAAAGA-AAAGGTCAGACAAAATCGCTTGTCTGTTTCAG-------GA 1173
.||..||| .||| ||||||| |||| || ||
BPUM_3568 1126 TATCTAGATGAAG--CAGACAA---------TCTG----AGACTCACTGA 1160
BSNT_00949 1174 -------AAAAACCTCTACAAAAAAAGAAAAGAAAAAATAGAGCGAAGCT 1216
||.|||.|||||..||||.|.|||||||..||.||.||....|
BPUM_3568 1161 AATAAATAAGAACATCTACGCAAAACGGAAAGAAACGATTGAACGCGTTT 1210
BSNT_00949 1217 TTGCAGATTCAAAACAGCTGCATGGGCTTCGCTATTGCAGGTTGAGGGGA 1266
||||.|||.|||||.|...|||||| || ||| |||| |..||
BPUM_3568 1211 TTGCGGATGCAAAAGAAAAGCATGG-------TA-TGC--GTTG-GACGA 1249
BSNT_00949 1267 AA--------ACGAAA-----TGTGAGTGAACAAGTTCTCCTCACAGCCG 1303
|| ||.||| |.|.|.|| ||||...|.||.||...||
BPUM_3568 1250 AACTTCGTGGACTAAAAAAAGTTTCAATG--CAAGCGATGCTTACTTTCG 1297
BSNT_00949 1304 CATGCCA-GAACATGAAGAAGATTGCCACATACCTAGCCAA----GCAGG 1348
| ||||| ||||.|.|| |.|.|||||.|| .||.|
BPUM_3568 1298 C-TGCCATGAACCTTAA------------AAAACTAGCAAACTGGACATG 1334
BSNT_00949 1349 GCTAG----------------- 1353
|..||
BPUM_3568 1335 GAAAGTACCATGTCCAGCGTAA 1356
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