Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02224 and BPUM_3572

See Amino acid alignment / Visit BSNT_02224 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_02224.1.24716.seq
#    -bsequence dna-align/BPUM_3572.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02224-BPUM_3572.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02224-BPUM_3572.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02224
# 2: BPUM_3572
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1977
# Identity:     973/1977 (49.2%)
# Similarity:   973/1977 (49.2%)
# Gaps:         711/1977 (36.0%)
# Score: 2007.5
# 
#
#=======================================

BSNT_02224         1 ATGCAAGCCTTTGATGAGCTTCTTAAGGTTGACG---------AGCTCAG     41
                     |||.|     ||.||    ||||         ||         |.|||| 
BPUM_3572          1 ATGAA-----TTCAT----TTCT---------CGCGTGCAATAATCTCA-     31

BSNT_02224        42 CT-TC---TCTTATGAAGA-----AGACGAGAAACCGGTTTT---TCAAG     79
                     || ||   |.|||||||.|     ||        ||.|||||   |||||
BPUM_3572         32 CTGTCCGTTTTTATGAACAGCCTCAG--------CCCGTTTTGCATCAAG     73

BSNT_02224        80 ACATTTCGTTTGAGC-TTCAAAAAGGAG--AATGTGTTTTATTATTAGGA    126
                        |.|| |.||..| ||||||||||||  ||.||| .||||| ||||||
BPUM_3572         74 ---TCTC-TCTGTCCATTCAAAAAGGAGAAAAGGTG-CTTATT-TTAGGA    117

BSNT_02224       127 CCGAGCGGGTGCGGTAAAAGCTCGCTCGCCCTTTGTTTAAACGGTCTATA    176
                     ||.|||||..||||||||                   |.||||.||   |
BPUM_3572        118 CCAAGCGGAAGCGGTAAA-------------------TCAACGCTC---A    145

BSNT_02224       177 TC-CGG---AGGCTTGCGACGGCATTCAGTCC-GGACATGTATTTCTATT    221
                     || |||   .||||      |||| |||.||| |.|||           |
BPUM_3572        146 TCTCGGTTCTGGCT------GGCA-TCATTCCAGAACA-----------T    177

BSNT_02224       222 TCAAAAGCCGGTCACAGATGCTGAGACCTCCCAAACG--ATTGCTCAG-C    268
                     |.|.||||.|     |.||||.|.|     |.||..|  |||||..|| |
BPUM_3572        178 TTAGAAGCGG-----ATATGCAGGG-----CGAAGTGATATTGCAAAGAC    217

BSNT_02224       269 ATGCCGGGGTCGTTTTTCAGGATCCTGATCAGCAGTTCTGCATGCTGA-C    317
                     ||.|.||.|||.|.||||||||.||||||...|||||.||.||||  | |
BPUM_3572        218 ATACAGGCGTCATGTTTCAGGACCCTGATTCCCAGTTTTGTATGC--ATC    265

BSNT_02224       318 G-GTGGAGGACGAAATTGCATT----------------------------    338
                     | ||..|.||.||||||||.||                            
BPUM_3572        266 GCGTCAATGAAGAAATTGCCTTTAGCTTAGAGAACCGCTCCGTCCCTCGC    315

BSNT_02224       339 --CGGGCTGGA--AAATC-------------TGC--AAATTCCAA----A    365
                       ||.|.||||  |.|||             |||  |||.|||||    |
BPUM_3572        316 GACGAGATGGATGATATCATTCAACAGCTCATGCAAAAAGTCCAACTCGA    365

BSNT_02224       366 AGAAGA----AATGACAGAGAAAATCAACACCGTATTAGAAAAATTGCGC    411
                     ||..||    ||| |||||                              |
BPUM_3572        366 AGTCGATCCGAAT-ACAGA------------------------------C    384

BSNT_02224       412 ATT-ACCCATTTAAAAGAAAAAACGATATCTACCCTTTCAGGAGGACAAA    460
                     ||| ||.|||                |||||         ||.||....|
BPUM_3572        385 ATTCACACAT----------------TATCT---------GGCGGTATGA    409

BSNT_02224       461 AGCAAAAAGTGGCTCTCGCCTGTATTTTGGCGATGGAGCC---TGAGCTT    507
                     ||||...|.||||.||.||.|||.|.||.||..|.|||||   ||.|| |
BPUM_3572        410 AGCAGCGATTGGCGCTTGCTTGTTTATTAGCTTTAGAGCCAGATGTGC-T    458

BSNT_02224       508 ATTATTTTAGATGAGCCGACCTCTCTTTTAGACCCTT--TCTCAGCGCG-    554
                     .||.|||  |||||.||||||.|.|    ||   |||  || ||||..| 
BPUM_3572        459 GTTCTTT--GATGAACCGACCGCAC----AG---CTTGATC-CAGCAGGC    498

BSNT_02224       555 -----GGAGTTCGTTCATCTGATGAAGGATCTTCAGCGGGAAAAAGGTTT    599
                          ||||.||.|||..||         |||.||||       ||.||.
BPUM_3572        499 AGAATGGAGATCTTTCGGCT---------TCTACAGC-------AGCTTG    532

BSNT_02224       600 CAGC--CTCCTCGTCA--------------TTGAGCACCAGCTTGAT---    630
                     ||||  .||..||.||              |.|||||...|||.|||   
BPUM_3572        533 CAGCTGATCAGCGACAAACCATGATTTTTGTAGAGCATGTGCTAGATGGT    582

BSNT_02224       631 ------GAATGGGCGCCTTGGATTGAGAGAACGATCGTACTCGACAAATC    674
                           |||         |||||.||..|...|||..||.|.||| .|||
BPUM_3572        583 GTCATCGAA---------TGGATGGACCGGGTGATTTTATTAGAC-GATC    622

BSNT_02224       675 -AGGCAAAAAGGC------GCTG--------------GATGGCTTGACGA    703
                      |||||     ||      ||||              ||||..|||||||
BPUM_3572        623 AAGGCA-----GCATCTTAGCTGATGGATCTCCAAAAGATGTATTGACGA    667

BSNT_02224       704 ------AAAATCTATTTCAG-CATGAA---------------GCGG-AGA    730
                           ||||        || .|||||               |||| .||
BPUM_3572        668 CATATGAAAA--------AGAAATGAAAGAGGCAGGGATATGGCGGCCGA    709

BSNT_02224       731 CACTA------AAGAAATTGGGCATCACCATTCCAAAGGTC--TGTCATC    772
                     .|.||      .||||||.|..||..|.|.|||  |||.||  |.|||||
BPUM_3572        710 AATTATTTCCCGAGAAATGGTCCACAATCCTTC--AAGATCCATTTCATC    757

BSNT_02224       773 TGCAGGAAAAGCTGAGT-ATGCCGTTTA-------CTTTATCAAAAAAGA    814
                       ||       .||||| || .||||||       |||  |.||..||||
BPUM_3572        758 --CA-------ATGAGTCAT-ACGTTTATGCAAACCTT--TGAAGCAAGA    795

BSNT_02224       815 TGCTGTTCAAAGAGCCTATTCCTCCCGGGCATGCCAAAAAGAAGGAAGCT    864
                             |||||||            .||||     |||.|||      
BPUM_3572        796 --------AAAGAGC------------AGCAT-----AAACAAG------    814

BSNT_02224       865 CCTTCTG-GGGAGAGTGTGCTTGAAGTCAGCAGCCTTTCGTTCGCGAGAG    913
                          || .||.||.||.||..||...||.||    |.||||        
BPUM_3572        815 -----TGCCGGCGACTGAGCGGGAGACCATCA----TGCGTT--------    847

BSNT_02224       914 GACAGCAGACGATTTTC------------------AAAGACAT-------    938
                          ||||.|||.|||                  ||||| ||       
BPUM_3572        848 -----CAGAAGATCTTCAATTAAGCTACGGGAAAAAAAGA-ATTATGAGT    891

BSNT_02224       939 ------CAGCTTTTCGTTGCGCGGAGGCTCTTTAA-------------CG    969
                           ||||||              |.|.||.||             .|
BPUM_3572        892 GATCTCCAGCTT--------------GATATTAAAACAGGGGATTGGGTG    927

BSNT_02224       970 GCGCTTGTTGGTCCGAATGGCACT-GGAAAATCGACGC-----TCTT-AT   1012
                     |||.|..||||....|||||.|.| ||||||     ||     |||| |.
BPUM_3572        928 GCGATCATTGGGGAAAATGGAAGTGGGAAAA-----GCACATGTCTTAAA    972

BSNT_02224      1013 CAGTTCTGGCCCGTCTCATGAAACCGCAAAGCGGC-----------AAAA   1051
                     ||  |.|||..|||.|...|..|.||.|||..|||           ||||
BPUM_3572        973 CA--TTTGGTTCGTTTAGAGTCAACGAAAAAAGGCCACATTTTCTTAAAA   1020

BSNT_02224      1052 -------TCCTTCTCTA-----TGACCAG-CCGCTGCAGAAATATAAAGA   1088
                            ||||    ||     ||..||| .||    ||||.||| |.||
BPUM_3572       1021 GACACACTCCT----TAAAAAGTGGTCAGATCG----AGAACTAT-ATGA   1061

BSNT_02224      1089 AAAAGAATTGCGTAAACGGATGGGATTTGTTTTTCAAAACCCTGAGCATC   1138
                     |||||.|               ||.|||||.||||||||.||.||||.||
BPUM_3572       1062 AAAAGCA---------------GGCTTTGTGTTTCAAAATCCGGAGCTTC   1096

BSNT_02224      1139 AATTCGTCAC-CGATACGGTGTATGACGA----GCTTCTGTTCGGCCAGA   1183
                     |||||.| || .|||||.||||..||.||    ||.|.||.|     .||
BPUM_3572       1097 AATTCAT-ACAAGATACAGTGTTCGATGAAATTGCATTTGGT-----GGA   1140

BSNT_02224      1184 AAGCAAATGCTGA-----------AAC--TG----AGAAAAAAGCGCAA-   1215
                     |.|||   ||.||           |||  ||    ||||||||   |.| 
BPUM_3572       1141 AGGCA---GCGGAATTGGCCAGAGAACGTTGTACAAGAAAAAA---CCAT   1184

BSNT_02224      1216 -CACCTGCTG-CAGCGTTTTGGTCTTG---CGCATTTGGCTGATCATCAT   1260
                      ||.||..|| .||.| ||.|||.|.|   .||||   ||..|...||||
BPUM_3572       1185 TCAGCTATTGAAAGAG-TTCGGTTTAGAAAAGCAT---GCAAAAGCTCAT   1230

BSNT_02224      1261 CCGTTTGCGATCAGCCAAGGGCAAAAACGGCGACTGAGCGTAGCTACTAT   1310
                     ||.||..|..|.|||..|||.||||||.|..||.||||.||.|||||.||
BPUM_3572       1231 CCTTTCACTTTAAGCTTAGGTCAAAAAAGAAGATTGAGTGTGGCTACAAT   1280

BSNT_02224      1311 GCTCATGCATGACGTAA--AGGTTTTATTATTAGACGAACCAACCTTTGG   1358
                     ||||.|...|||  |.|  |.||..||||.|||||||||||.||.||.||
BPUM_3572       1281 GCTCCTTTTTGA--TCAGGATGTCCTATTGTTAGACGAACCGACTTTCGG   1328

BSNT_02224      1359 CCAGGATGCCCGCACGGCGGCTGAATGCAT--GG-----AAATGA--TTC   1399
                     .|||||||...|.||.|||...||||..||  ||     |||.||  .||
BPUM_3572       1329 ACAGGATGAAAGAACAGCGAAGGAATTAATCAGGCGCTTAAAAGAACGTC   1378

BSNT_02224      1400 AGCGTATCAAGGCAGAGGGAACCGCTGTCCTTATGATTACACACGATATG   1449
                     |.||  .||||||       |||.||.|..|.|||.|.|||||.||||||
BPUM_3572       1379 AACG--CCAAGGC-------ACCACTATTTTAATGGTCACACATGATATG   1419

BSNT_02224      1450 GAGCTAGTCTCTTCGTATGCTGA-CAGCGTGCTTGTGCTTC----ACGAT   1494
                     ||.||.|||..|..||.|||..| || .||||||.|..|||    |.||.
BPUM_3572       1420 GACCTTGTCGATGAGTGTGCCAATCA-AGTGCTTCTTTTTCATCAAGGAA   1468

BSNT_02224      1495 ACGGGCCTG-------------GCCTT-TGACGGATCTCCAGCTCAGTTG   1530
                     |   ||.||             ||||| |||            ||   ||
BPUM_3572       1469 A---GCATGTGTATGAAGGTACGCCTTATGA------------TC---TG   1500

BSNT_02224      1531 TTTTC---TCAAGAAACTGGGCTTGTCCAAAAAGCAAAGCTCACC--CT-   1574
                     |||||   |||.|||      |||||        |||.|||.|.|  || 
BPUM_3572       1501 TTTTCAAATCAGGAA------CTTGT--------CAATGCTTATCAGCTG   1536

BSNT_02224      1575 ----CCCCCTT-CTATATAAATGGATGGCATATCAAG--AGGAGGTGCGT   1617
                         ||||.|| |..|||.|||..|||.|..|  |||  ||||.|||| |
BPUM_3572       1537 AGAGCCCCGTTGCATTATCAATATATGACTGA--AAGAAAGGACGTGC-T   1583

BSNT_02224      1618 GATGAAGCAGCCGTTACATCTCATTAA   1644
                     ||.||        ||.||   .|.|||
BPUM_3572       1584 GACGA--------TTGCA---AAGTAA   1599


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.