Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00682 and BPUM_3581
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence dna-align/BSNT_00682___ycnE.1.24716.seq
# -bsequence dna-align/BPUM_3581___ycnE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00682___ycnE-BPUM_3581___ycnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00682___ycnE-BPUM_3581___ycnE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00682___ycnE
# 2: BPUM_3581___ycnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 334
# Identity: 189/334 (56.6%)
# Similarity: 189/334 (56.6%)
# Gaps: 86/334 (25.7%)
# Score: 490.0
#
#
#=======================================
BSNT_00682___ 1 ATGATCGTATTA--CAAGC-----------TTACATC-----AAAGTAAA 32
||||| ||||| ||.|| || |||| |||| ||
BPUM_3581___y 1 ATGAT--TATTATTCATGCAGGAATGACCATT-CATCCAGAAAAAG--AA 45
BSNT_00682___ 33 ACC--------AGAAAAACGCGAGGAATTTTTGAGCGAGGCTCAATCGCT 74
||| ||||.||..|.|.|.|||..|||
BPUM_3581___y 46 ACCGTATTTCTAGAAGAAATCAATGCATTAATGA---------------- 79
BSNT_00682___ 75 TGTTCAGCATTCAAGAGCTGAGGAAGGCAACG----CGCAATACGACCTA 120
|||| ||||..|||.||.||||||||.| | |||.|.||.
BPUM_3581___y 80 ----CAGC-TTCACAAGCGGAAGAAGGCAATGTATCC----TACAAGCTG 120
BSNT_00682___ 121 TTC---GAAAAAG-TAGGCGAAGAAAATACATTTGTCATGCTTGAAAAAT 166
||| ||.|.|| || |.||||||||.||..|.|||.|.|||...|
BPUM_3581___y 121 TTCAAGGATACAGATA----AGGAAAATACCTTCTTAATGGTAGAAGTGT 166
BSNT_00682___ 167 GGAAAGATGAAGCGGCAATGAAATTCCATAACGAAACTGCGCATTTCCAA 216
||||||||||.||.||..|..|...||||||.|..|.|||.|||||||||
BPUM_3581___y 167 GGAAAGATGACGCTGCGGTTCAGAGCCATAATGCGAGTGCACATTTCCAA 216
BSNT_00682___ 217 GGGTTTGTCGCAAAAGGAAAAGAACTGCTGAG-CGCCCCTCTTGATGTTG 265
|..||.|||||.||.|.||||||| |.||.|| |||.||.|||||.||||
BPUM_3581___y 217 GCTTTCGTCGCGAAGGCAAAAGAA-TTCTTAGCCGCTCCACTTGACGTTG 265
BSNT_00682___ 266 T--CCGCACAGAGCTTAGTGAGTAA--------- 288
| ||...|| || ||.||.||
BPUM_3581___y 266 TTGCCTTTCA-AG----GTCAGCAACTTTCATAG 294
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