Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00978 and BPUM_3582

See Amino acid alignment / Visit BSNT_00978 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:38
# Commandline: needle
#    -asequence dna-align/BSNT_00978___ydgI.1.24716.seq
#    -bsequence dna-align/BPUM_3582___ydgI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00978___ydgI-BPUM_3582___ydgI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00978___ydgI-BPUM_3582___ydgI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00978___ydgI
# 2: BPUM_3582___ydgI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 645
# Identity:     508/645 (78.8%)
# Similarity:   508/645 (78.8%)
# Gaps:          21/645 ( 3.3%)
# Score: 2023.5
# 
#
#=======================================

BSNT_00978___      1 -----------ATGATCAAAACAAACGATTTTATGGAAATTATGAAAGGC     39
                                ||  |.||||||||||||||||||||||||||||||||.
BPUM_3582___y      1 ATGGCTACAACAT--TAAAAACAAACGATTTTATGGAAATTATGAAAGGA     48

BSNT_00978___     40 CGCCGTTCTATCCGCAACTATGATCCGGCAGTAAAAATCAGCAAAGAAGA     89
                     |||||||||||.||.||||||||.||.||.||.|||||||||||||||||
BPUM_3582___y     49 CGCCGTTCTATTCGTAACTATGACCCAGCTGTGAAAATCAGCAAAGAAGA     98

BSNT_00978___     90 AATGACAGAGATCTTAGAGGAAGCAACAACTGCCCCATCTTCTGTTAACG    139
                     ||||.|||||||..||||.||||||||||||||.|||||.||.||.||.|
BPUM_3582___y     99 AATGGCAGAGATTCTAGAAGAAGCAACAACTGCACCATCATCAGTGAATG    148

BSNT_00978___    140 CGCAGCCATGGCGTTTTCTTGTCATTGACAGCCCGGAAGGAAAAGAAAAG    189
                     |.|||||.|||||.||..|.||||||||||||||.|||||||||||||||
BPUM_3582___y    149 CACAGCCTTGGCGCTTCATGGTCATTGACAGCCCAGAAGGAAAAGAAAAG    198

BSNT_00978___    190 CTCGCACCGCTTGCAAGCTTTAACCAAACACAGGTCACAACATCATCTGC    239
                     ||.|||||.|||||||..||.||||||||.||.||..||||||||.|.||
BPUM_3582___y    199 CTTGCACCACTTGCAAAATTCAACCAAACTCAAGTGTCAACATCAGCAGC    248

BSNT_00978___    240 TGTCATCGCTGTATTTGCAGACATGAA---CAATGCAGACTACTTAGAAG    286
                     ||||||.||.|||||||||||.|||||   ||||   ||.||||||||.|
BPUM_3582___y    249 TGTCATTGCCGTATTTGCAGATATGAAAAGCAAT---GAATACTTAGATG    295

BSNT_00978___    287 AAATCTATTCAAAAGCCGTGGAACTTGGTTACATGCCGCAGGAGGTCAAA    336
                     ||||.|||||||||||.||.||.|.|||.||||||||.||.||.||.|||
BPUM_3582___y    296 AAATTTATTCAAAAGCAGTAGAGCATGGCTACATGCCTCAAGAAGTGAAA    345

BSNT_00978___    337 GACAGACAAATCGCCGCGCTGACCGCACATTTTGAAAAGCTTCCGGCACA    386
                     ||.||||||||.||.||.||.||.|||||.|||||....|||||.|..||
BPUM_3582___y    346 GAAAGACAAATTGCTGCACTAACTGCACACTTTGAGGTACTTCCAGAGCA    395

BSNT_00978___    387 GGTCAACCGTGAAACGATCCTGATTGATGGAGGTCTTGTTTCCATGCAGC    436
                     .||||||||.|||||.|||.|.|||||.||.||..||||.||.|||||||
BPUM_3582___y    396 AGTCAACCGCGAAACAATCTTAATTGACGGTGGAATTGTGTCTATGCAGC    445

BSNT_00978___    437 TGATGCTGACTGCACGCGCGCATGGCTACGATACAAACCCGATCGGCGGA    486
                     |.|||||..|.|||||.||.||.|||||.||||||||.||.||.||.||.
BPUM_3582___y    446 TTATGCTTGCAGCACGTGCACACGGCTATGATACAAATCCAATTGGTGGT    495

BSNT_00978___    487 TACGATAAAGAAAACATCGCGGAAACCTTCGGATTAGATAAAGAACGTTA    536
                     |..|||||||||..||||||.|||||.||.||.|..||||||||||||||
BPUM_3582___y    496 TTTGATAAAGAAGTCATCGCTGAAACATTTGGCTGGGATAAAGAACGTTA    545

BSNT_00978___    537 TGTACCGGTTATGCTACTTTCTATCGGAAAAGCAGCAGACGAAGGCTATG    586
                     ||||||.||.|||||..|.||.||.||.|||||.||.||||||||.||||
BPUM_3582___y    546 TGTACCAGTAATGCTGTTATCAATTGGGAAAGCTGCTGACGAAGGTTATG    595

BSNT_00978___    587 CTTCCTACCGTCTGCCGATTGATAC-AATTGCAGAATGGAAATAA    630
                     ||||.|||||..|.|||||||| || .|||.||||.|||||||||
BPUM_3582___y    596 CTTCTTACCGCTTACCGATTGA-ACGCATTACAGAGTGGAAATAA    639


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