Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00979 and BPUM_3583

See Amino acid alignment / Visit BSNT_00979 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:39
# Commandline: needle
#    -asequence dna-align/BSNT_00979.1.24716.seq
#    -bsequence dna-align/BPUM_3583___ydgJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00979-BPUM_3583___ydgJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00979-BPUM_3583___ydgJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00979
# 2: BPUM_3583___ydgJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 455
# Identity:     313/455 (68.8%)
# Similarity:   313/455 (68.8%)
# Gaps:          31/455 ( 6.8%)
# Score: 1042.0
# 
#
#=======================================

BSNT_00979         1 ------TTGGCGTCATTTTGTTCAGAGGAAGCCGAGATTTTATATCAGCT     44
                           |||.|..|||||||.||.||.|||||.|||.|.|||||.|...|
BPUM_3583___y      1 ATGGCATTGACTGCATTTTGCTCTGAAGAAGCAGAGGTATTATACCGTTT     50

BSNT_00979        45 GCAAGGCGTGAACAAGGTGATTGGCGTGAAGTTCGAGGCATGCACGGGCA     94
                     |||..||||||||....||||.||||||||||||||.|||||||||||||
BPUM_3583___y     51 GCAGTGCGTGAACCGTATGATGGGCGTGAAGTTCGAAGCATGCACGGGCA    100

BSNT_00979        95 TCAGCCAATCTCGTTTGGAATTGCTGACATTGCTTTATCATGCAGATGAG    144
                     ||||||||||..|.||.||.|||||..||.||.|.|.|||.|||||.||.
BPUM_3583___y    101 TCAGCCAATCAAGATTAGAGTTGCTCTCACTGTTATTTCAAGCAGACGAA    150

BSNT_00979       145 AT----CAGTCAAAGCGACCTTCAAAAGAAAGTAAATATCGATAGCGCAG    190
                     ||    ||||||    ||..|.||.||.|||||||||||.|||||.||.|
BPUM_3583___y    151 ATCAGCCAGTCA----GATTTGCAGAAAAAAGTAAATATTGATAGTGCGG    196

BSNT_00979       191 CCGTTACCAGACACCTGAAACAGCTGGAAGCTAAAGGCATGGTATCAAGG    240
                     |.||.||..|.|||.|.||||||.|.|||.|.|||||.|||||..|    
BPUM_3583___y    197 CTGTGACGCGTCACTTAAAACAGTTAGAAACAAAAGGAATGGTCAC----    242

BSNT_00979       241 CGGCGC------AAGCCTGAGGACAACCGCATCACCCTTGTTCGGTTAAC    284
                       ||||      |||||.||.||.||.||..||||.||||||||..|.||
BPUM_3583___y    243 --GCGCAGAAGAAAGCCAGAAGATAATCGAGTCACACTTGTTCGTCTGAC    290

BSNT_00979       285 AGACCAAGGAAGAGAGCGAATTGAGTCTTCTAAGAAGGAAAAGGAGCGTT    334
                     |||..||||||||....||||.||..|||||||.||.|||||.||.||.|
BPUM_3583___y    291 AGATGAAGGAAGAACAAGAATCGAAGCTTCTAAAAAAGAAAAAGAACGAT    340

BSNT_00979       335 TCATGAAGGAAATGCTCGCAAATGTAAGCGCAGAAGAACGCCGCCTGCTC    384
                     |.||....||||||||.|..||.|||||.|..||||||||....||.|||
BPUM_3583___y    341 TTATCTCAGAAATGCTTGAGAACGTAAGTGACGAAGAACGAAAGCTTCTC    390

BSNT_00979       385 ATTGATGTGCT-GGCGCGCATGCGAAACAATATAGATAATATTGA---AG    430
                     |.||||||||| .|| ||.||.|.|.|.||.||.||.||.|||.|   |.
BPUM_3583___y    391 ACTGATGTGCTCAGC-CGAATACAACAAAACATCGAAAAGATTCAAACAA    439

BSNT_00979       431 CTTAA    435
                     |||||
BPUM_3583___y    440 CTTAA    444


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