Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06045 and BPUM_3586
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_06045___nupC.1.24716.seq
# -bsequence dna-align/BPUM_3586___nupC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06045___nupC-BPUM_3586___nupC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06045___nupC-BPUM_3586___nupC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06045___nupC
# 2: BPUM_3586___nupC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1212
# Identity: 889/1212 (73.3%)
# Similarity: 889/1212 (73.3%)
# Gaps: 60/1212 ( 5.0%)
# Score: 3173.0
#
#
#=======================================
BSNT_06045___ 1 ATGAAGTATTTGATTGGGATTATCGGTTTAATCGTGTTTTTAGGCCTCGC 50
|||||.||..|||||||.||.||||||||..|.|||.||.|.|.|.|.||
BPUM_3586___n 1 ATGAAATACGTGATTGGTATCATCGGTTTGCTGGTGATTCTCGCCATTGC 50
BSNT_06045___ 51 GTGGATCGCGAGCAGCGGCAAAAAAAGAATTAAGATCCGCCCAATTGTTG 100
.|||.|.||.||.|.||||||||||.|..|.||..||||.|||.|..|||
BPUM_3586___n 51 ATGGCTAGCTAGTAACGGCAAAAAACGGGTAAAATTCCGTCCAGTAATTG 100
BSNT_06045___ 101 TTATGCTCATTTTGCAATTTATTCTTGGCTACATTCTCCTCAATACCGGG 150
|.|||.|..|..|||||||||||.|.||.||.|||||.||||||||.||.
BPUM_3586___n 101 TCATGATTGTACTGCAATTTATTTTAGGTTATATTCTGCTCAATACAGGT 150
BSNT_06045___ 151 ATAGGGAATTTCCTCGTAGG-AGGATTT-GCAAAAGGTTTCGGTTACCTG 198
.|.||.||.|.|.|..|.|| | |||| ||.|||||.|| |.|.|||
BPUM_3586___n 151 GTTGGAAACTACTTAATTGGTA--ATTTCGCCAAAGGGTT---TAAACTG 195
BSNT_06045___ 199 CTT---GAATACGCGGCAGAGGGAATTAACTTTGTGTTTGGCGGCTTGGT 245
||| |..||.||.|..||.|||||.|||||.||.||||||||.||..|
BPUM_3586___n 196 CTTTTAGGCTATGCCGGTGAAGGAATCAACTTCGTATTTGGCGGATTAAT 245
BSNT_06045___ 246 GAATG----CGGACCAAACGACATTCTTTATGAATGTTCTCTTGCCAATC 291
||||| .|.|.|| ||.|||||.||.||.||..|..||||.||.
BPUM_3586___n 246 GAATGATAATGCATCA----ACTTTCTTCATCAACGTCTTACTGCCGATT 291
BSNT_06045___ 292 GTGTTTATTTCCGCTCTGATCGGGATTCTGCAAAAGTGGAAAGTCCTCCC 341
||.||||||||.||..|||||||.|||.||||..|.|||....||||.||
BPUM_3586___n 292 GTCTTTATTTCGGCATTGATCGGTATTTTGCAGCATTGGCGTATCCTTCC 341
BSNT_06045___ 342 GTTTATCATTA----GATATATCGGCCTTGCC--CTCAGCAAGGTAAACG 385
|.||||| .|| || ||||| ||..| ||||||||.|||||||
BPUM_3586___n 342 GCTTATC-GTACGCGGA---ATCGG--TTATCTGCTCAGCAAAGTAAACG 385
BSNT_06045___ 386 GTATGGGAAGATTGGAATCGTATAACGCAGTGGCTTCTGCGATTTTAGGG 435
|||||||.|.|.|.|||||.||.||||||||.||.||||||||||||||.
BPUM_3586___n 386 GTATGGGGAAACTAGAATCTTACAACGCAGTAGCGTCTGCGATTTTAGGC 435
BSNT_06045___ 436 CAGTCAGAAGTATTTATCTCCTTGAAGAAAGAACTCGGTCTTTTAAATCA 485
||.||||||||.|||||.|||.|.||||||.|.|||||..|.|||..|||
BPUM_3586___n 436 CAATCAGAAGTCTTTATTTCCATTAAGAAACAGCTCGGATTATTACCTCA 485
BSNT_06045___ 486 GCAGCG-CTTGTACACGCTTTGCGCATCTGCGATGTCAACTGTATCAATG 534
|||||| ||| ||.||..|.||.||||||||.|||||.||.|||||.|||
BPUM_3586___n 486 GCAGCGTCTT-TATACATTATGTGCATCTGCCATGTCGACCGTATCGATG 534
BSNT_06045___ 535 TCGATTGTCGGCGCGTATATGACAATGCTGAAACCGGAATATGTTGTAAC 584
|||||||||||.|||||.|||..||||.|.|||||.||.||.||.||.||
BPUM_3586___n 535 TCGATTGTCGGTGCGTACATGCAAATGATTAAACCAGAGTACGTGGTCAC 584
BSNT_06045___ 585 AGCGCTTGTTTTGAACTTATTTGGCGGTTTCATTATCGCTTCTATTATCA 634
|||.|||||..|||||.|||||||.||.||.||||||||.||||||||||
BPUM_3586___n 585 AGCACTTGTGCTGAACCTATTTGGTGGATTTATTATCGCGTCTATTATCA 634
BSNT_06045___ 635 ATCCGTACGAGGTTGCAAAAGAAGAGGATATGCTTCGTGTTGAGGAAGAA 684
||||.||.||.||.||.||.||.||.||.||||||...||.|..||||||
BPUM_3586___n 635 ATCCATATGAAGTAGCTAAGGACGAAGACATGCTTGAAGTCGTTGAAGAA 684
BSNT_06045___ 685 GAAAAACAATCCTTCTTCGAAGTGCTCGGAGAATACATTCTTGACGGTTT 734
|||||.|||||||||||.|||.||||.||.|||||.|||.|.||||||||
BPUM_3586___n 685 GAAAAGCAATCCTTCTTTGAAATGCTTGGCGAATATATTATGGACGGTTT 734
BSNT_06045___ 735 CAAAGTAGCGGTTGTCGTCGCTGCGATGCTGATTGGATTTGTCGCGATT- 783
||||||||||.||||.||||||||||||.||||||||||.||.|| |||
BPUM_3586___n 735 CAAAGTAGCGATTGTTGTCGCTGCGATGTTGATTGGATTCGTTGC-ATTA 783
BSNT_06045___ 784 ATTGCCTTGATCAATGGCATTTTTAATGCAGTATTCGGTATTTCGTTCCA 833
|||||..||||.||||||||.||||..||.||..|||||.|.||.|||||
BPUM_3586___n 784 ATTGCGATGATTAATGGCATCTTTACGGCTGTTATCGGTGTGTCTTTCCA 833
BSNT_06045___ 834 AGGCATTCTTGGATATGTGTTTGCTCCATTCGCTTTTCTTGTGGGTATCC 883
||...|.|||||.|||||.|||||||||||.|||||..||||.|||.|.|
BPUM_3586___n 834 AGATGTACTTGGTTATGTATTTGCTCCATTTGCTTTCATTGTTGGTGTAC 883
BSNT_06045___ 884 CATGGAATGAAGCTGTTAATGCGGGAAGCATTATGGCAACAAAAATGGTA 933
|.||||..|||||.||..|.||.|||||||||||||||||.||||||||.
BPUM_3586___n 884 CTTGGAGCGAAGCAGTACAAGCAGGAAGCATTATGGCAACGAAAATGGTT 933
BSNT_06045___ 934 TCGAATGAATTTGTCGCCATGACGTCGCTTACGCAAA------------A 971
||.||.||||||||.||.|| ||||| |
BPUM_3586___n 934 TCCAACGAATTTGTGGCAAT------------GCAAATCCTGTCTGGCGA 971
BSNT_06045___ 972 CGGTTTCCATTTCAGCGGC-CGTACAACAGCGATCGTATCGGTATTCCTT 1020
.|.||||||||||| |.|| ||||||..||||||..|.||.|||||||||
BPUM_3586___n 972 TGCTTTCCATTTCA-CTGCTCGTACAGAAGCGATTATCTCTGTATTCCTT 1020
BSNT_06045___ 1021 GTGTCCTTTGCGAACTTCTCCTCAATCGGAATCATTGCCGGTGCCGTAAA 1070
||.||.||||||||||||||.||.|||||.||||||||.||.||.||.||
BPUM_3586___n 1021 GTATCATTTGCGAACTTCTCTTCTATCGGTATCATTGCTGGAGCAGTCAA 1070
BSNT_06045___ 1071 AGGACTGAATGAAAAGCAAGGAAATGTCGTCGCTCGTTTCGGCTTGAAAT 1120
|||..|.||.|||||.||||||||.||.||.||.||.||.||.||.||..
BPUM_3586___n 1071 AGGCTTAAACGAAAAACAAGGAAACGTGGTTGCACGCTTTGGATTAAAGC 1120
BSNT_06045___ 1121 TATTATACGGTGCTACGCTTGTCAGCTTTTTATCAGCAGCAATTGTGGGC 1170
|..|||..|||||.||.|||||||||||.|||.||||||...||||.||.
BPUM_3586___n 1121 TTCTATTTGGTGCAACACTTGTCAGCTTCTTAACAGCAGGCGTTGTCGGT 1170
BSNT_06045___ 1171 TTGATTTACTGA 1182
||||||||||.|
BPUM_3586___n 1171 TTGATTTACTAA 1182
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