Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01678 and BPUM_3600

See Amino acid alignment / Visit BSNT_01678 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_01678.1.24716.seq
#    -bsequence dna-align/BPUM_3600___yhaZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01678-BPUM_3600___yhaZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01678-BPUM_3600___yhaZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01678
# 2: BPUM_3600___yhaZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity:     387/1165 (33.2%)
# Similarity:   387/1165 (33.2%)
# Gaps:         644/1165 (55.3%)
# Score: 935.0
# 
#
#=======================================

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y      1 ATGTGGGAGGCGGACACGATCGAACCATTAAAACATGTGTACAATGAATT     50

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y     51 ATTTATCAAAGATTTAGCAGAGAAATTCGCACAGACTTCGTCTGAATTTG    100

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y    101 ATGCTGAGCCGTTCAAGCGACTCGTATTTCAAGAGGATTGGGAGCAGCTT    150

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y    151 GAGTTAAAAGGGCGGATGAGACGAGTCACTGAATCGATGCATGCCTGTCT    200

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y    201 GCCGGCAGATTATGAGAAGGCAATGGAGATACTGCGTCAGGCAGCCCCGT    250

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y    251 ATTTTTCAGGGCTTAGTGCGCTCGTCTTTCCAGACTACGTCGAGACGTAC    300

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y    301 GGTCTTGCACATTGGGACCTCTCGATCAAAGCGCTCGAATTTTTCACACC    350

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y    351 CTTTTCCACTTCTGAATTTGCTGTTCGGCCATTTCTGATTCAAGATCAAG    400

BSNT_01678         0 --------------------------------------------------      0
                                                                       
BPUM_3600___y    401 GCAAAATGCTGGCGCAAATGCTTGTATGGTCTCAGGATCAAAATGAGCAT    450

BSNT_01678         1 ------------------------------------------------TT      2
                                                                     ||
BPUM_3600___y    451 ATACGGAGGCTGGCTAGTGAAGGGTGTAGACCACGTCTGCCATGGGGCTT    500

BSNT_01678         3 GAAATCGGACCCTTC------------CCCC---GT---ATTGCCGATCC     34
                        |||.|.||||||            ||||   ||   ..||||.||..
BPUM_3600___y    501 ---ATCTGTCCCTTCACTTAAAAAGAACCCCTCGGTCACGCTGCCCATTT    547

BSNT_01678        35 TTGAGAAGCTG-ATGCAGGACGAGT--CCTTATATGTAAGAAAAAGCGTG     81
                     |.||.||..|| |.||| |||..||  |.||||.||.|  .|||||.||.
BPUM_3600___y    548 TGGAAAACTTGAAGGCA-GACCCGTCGCGTTATGTGCA--GAAAAGTGTA    594

BSNT_01678        82 GCCAACAACCTTAATGATATATCAAAAACGCATCCTCATTTACTGAGAAA    131
                     ||.||..|..|.||||||||.||...||..||.||..||.||.|||    
BPUM_3600___y    595 GCGAATCATTTAAATGATATTTCTGCAATTCAGCCAGATCTAATGA----    640

BSNT_01678       132 AGTCGCAGA----TCAA---TGGTACGGAACACATC-CCCATACAGACTG    173
                        .|||||    ||||   |||||.||||| ||.| ..|||||..||||
BPUM_3600___y    641 ---AGCAGACGGTTCAAAACTGGTATGGAAC-CAACGAACATACCAACTG    686

BSNT_01678       174 GATTATCAAACACGCCTATCGGACCTTATTAAAAAAGGGGGATAAACAGG    223
                     ||||.|||||||.||.|..||.||.|||.|.|||||.||.|||  .|||.
BPUM_3600___y    687 GATTGTCAAACATGCATCCCGTACTTTACTCAAAAAAGGAGAT--CCAGC    734

BSNT_01678       224 CCTTA--GCGCTTTTTGGTTAT---GAAAATGCTGATTCGATACAACTAC    268
                     ..|||  |||.|.|||||.|||   ||..||.|  ||.|| |.||..||.
BPUM_3600___y    735 TATTATGGCGTTGTTTGGCTATGGGGACCATCC--ATCCG-TTCACGTAA    781

BSNT_01678       269 ATGATTT-AACATGCCAGCCCAAA--CGTAT--AGTTATTGGCG---AAA    310
                     ..||||| ||.||   .|..||||  |.|||  ||  ||.||||   |||
BPUM_3600___y    782 CGGATTTGAAGAT---CGTACAAAATCCTATTCAG--ATCGGCGAGAAAA    826

BSNT_01678       311 GCCTTGAATTTTC---TTTCTCTATTCATTCAGATAGG--GATCAAAAAG    355
                         |||.|||||   ||.|.|||  ||..|.||||.|  |.|   ||||
BPUM_3600___y    827 ----TGACTTTTCATTTTACCCTA--CAAGCCGATAAGCCGTT---AAAG    867

BSNT_01678       356 -TAAGAATTGAGTACGCAATTGATTTTGTAAAAGCAAGAGG--CCAGCGT    402
                      |..|..|.|||||.||.|||||.|.|||.|||||..|.||  ||  ||.
BPUM_3600___y    868 CTGCGTGTAGAGTATGCCATTGACTATGTCAAAGCTCGGGGGACC--CGC    915

BSNT_01678       403 CATCAGAAAGTATTTAAAATAACA------GAAACAACTATGCGAAAAAA    446
                     .||||.||||||||||||||.|||      ||||||       ||.|.||
BPUM_3600___y    916 AATCAAAAAGTATTTAAAATCACAGAGTTTGAAACA-------GACACAA    958

BSNT_01678       447 CGAAACGAAATCACACACAAGAAT----------CCAATCCTTTAAGGAT    486
                     ||        |.|||.| .|||||          .|||||.|||.|..||
BPUM_3600___y    959 CG--------TTACATA-GAGAATTCGTCAGATCACAATCTTTTCAAAAT    999

BSNT_01678       487 TTAACCACCAGAAAGCATTACAAAGGAATTCATACATTATCAGTGATCAT    536
                     .|.||.||.|||||.|||||..||||||..||||||.||.||.|.|||||
BPUM_3600___y   1000 ATGACGACGAGAAAACATTATGAAGGAACCCATACACTAACAATCATCAT   1049

BSNT_01678       537 CAATGGAGAGGT-----AAAAG-ATTCATTGGATTTCCAAGTTTGCTGA-    579
                     |||     .|||     ||||| ||..||| |||||..||| |..|.|| 
BPUM_3600___y   1050 CAA-----CGGTATTCCAAAAGCATCGATT-GATTTTGAAG-TAACAGAA   1092

BSNT_01678       579 ---------------    579
                                    
BPUM_3600___y   1093 GACAGCAACTCATGA   1107


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