Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06144 and BPUM_3601
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_06144___gntP.1.24716.seq
# -bsequence dna-align/BPUM_3601.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06144___gntP-BPUM_3601.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06144___gntP-BPUM_3601.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06144___gntP
# 2: BPUM_3601
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1598
# Identity: 825/1598 (51.6%)
# Similarity: 825/1598 (51.6%)
# Gaps: 520/1598 (32.5%)
# Score: 1827.5
#
#
#=======================================
BSNT_06144___ 1 ATGCCGTTAATCATCG---TTGCACTTGG-GAT----CTTAGCATTACTA 42
||||..|||.|||||| |||| || ||| ||| |||||.
BPUM_3601 1 ATGCTTTTATTCATCGTGATTGC----GGCGATTGTCCTT----TTACTC 42
BSNT_06144___ 43 TTTCTGATTA------------------------TGGGCTTAAAATTAAA 68
.||||.|||| ||.|||| |||||
BPUM_3601 43 ATTCTCATTACAGTCGCTAAGTTGAATCCATTTGTGAGCTT--AATTA-- 88
BSNT_06144___ 69 CACATTTATTTCCCTGCTGGTCGTATCGTTCGGCGTGGCACTGGCACTCG 118
|||.|||..||||.||.| |||..|||..| |
BPUM_3601 89 -----TTACTTCGATGCTAGTGG----GTTTTGCGACG-----------G 118
BSNT_06144___ 119 GGATGCCGTTCGATAAAGTTGTCAG-----------CTCCATCGAAGCAG 157
||||| ||| ||| ||| .||.||..||.|.|
BPUM_3601 119 GGATG------GAT----TTG-CAGGAAATCATTCAATCAATTAAAACGG 157
BSNT_06144___ 158 GAATAGGGGGGACTCTTGGCCA---------CATCGC--GCTCATCTTC- 195
||.|||| || |||.|| |||..|.|||
BPUM_3601 158 GATTAGG-------------CAATACGTTATCATTGCTGGCTATTGTTCT 194
BSNT_06144___ 196 -GGACTCGGTGCGATGCTGGGCAAGCTGATCGCGGATTCAGGAGGCGCAC 244
|..||.|||.|.|||||.||.||..||||.||.||.|||||.||.|||.
BPUM_3601 195 AGCGCTTGGTACCATGCTTGGAAAAATGATGGCTGAATCAGGGGGAGCAG 244
BSNT_06144___ 245 AGCGCATTGCGATGACGCTCGTCAACAAATT--------CGGT---GA-- 281
||||.||.|| ||| ||.|| |||| ||
BPUM_3601 245 AGCGAATAGC-----------TCA--AACTTTAATCGGCCGGTTTGGAAC 281
BSNT_06144___ 282 GAAAAATATTCAATGGGC--CGTTGTCATTGCCTCATTTATTATTGGGAT 329
|||.|||.|.||.||||| .|.||| |||...|.|||||..|.|||||
BPUM_3601 282 GAAGAATGTGCATTGGGCAATGATGT--TTGTTGCTTTTATCGTGGGGAT 329
BSNT_06144___ 330 TGCGTTATTTTTTGAAGTAGGACTGGTTCTATTAATTCCGATTGTCTTTG 379
..|..|.|||||..|.||.||..|.|||||..|.||||| ||..||||
BPUM_3601 330 ACCTGTCTTTTTCCAGGTCGGTTTCGTTCTTCTCATTCC--TTTACTTT- 376
BSNT_06144___ 380 CGATTTCAAGAG-AATTGAA-----GATTTCTATTTT----ATTTCTCGG 419
||.|||..| .|||||| .|||||..||.| ||| ||
BPUM_3601 377 ---TTACAATTGCCATTGAAACAGGCATTTCGCTTGTGACCATT----GG 419
BSNT_06144___ 420 AATCCCGATGGTCGC-GGCACTATCCGTCACACACGGTTTCCTGCCGCCG 468
.|||.||.|..|||| ||| ||.||.|||...||.||.||..|.|||||.
BPUM_3601 420 GATCTCGTTAATCGCTGGC-CTGTCTGTCGTGCATGGGTTAGTCCCGCCT 468
BSNT_06144___ 469 CACCCGGGACCTACGGCGATCGC--CGGTGAGTATGGC---------GCA 507
||.||.| ||||.||.|| |.|| |||| ||.
BPUM_3601 469 CATCCAG------CGGCAATGGCAGCCGT-----TGGCATCTATCATGCC 507
BSNT_06144___ 508 AACATTGGAGAA------GTGCTGCTGTACGGCTTTATCGTTGCTGTTCC 551
||| .|||.||| .|.||.||.|| ||||.||.|...|.||
BPUM_3601 508 AAC-GTGGGGAAAACCATTTTCTTCTCTA-----TTATTGTGGGATTGCC 551
BSNT_06144___ 552 GACAGTGCTCATTGCAGGGCCGTTAT---TTACAAAGTTCGCGAAA---- 594
|||||.|.|.|||||.||.|||.|.| .||.|..|.|.| ||||
BPUM_3601 552 GACAGCGATTATTGCTGGACCGCTGTATGGTAAATGGATTG-GAAAACGG 600
BSNT_06144___ 595 ------AAAATCGTTCC-----TGCATCATTTGCGAAAAACGGCAATATT 633
|||..|||||| ||| ||.|||| |||||
BPUM_3601 601 ATATATAAACCCGTTCCGGAGATGC------TGAGAAA----GCAAT--- 637
BSNT_06144___ 634 GCATCACTCGGCACACAAAAAACGTTTAACCTTGAAG------AAACACC 677
||||| |.|| .||||| || ||||.||
BPUM_3601 638 ---TCACT--GAAC----GAAACG-----------AGGATCGAAAACTCC 667
BSNT_06144___ 678 C-GGCTTTG-GAAT-CAGTGTCTTTACCGCAATGCTCCC---GATTATCA 721
| ||||||| |||| |..|| ||||||..|.||.|.|| ||||.|.|
BPUM_3601 668 CAGGCTTTGCGAATACGATG--TTTACCATATTGGTGCCGGTGATTTTGA 715
BSNT_06144___ 722 T-----------CATGTCGGTCGCGACCATTATC-GACC----------- 748
| ||| |.|||..||||||| .|||
BPUM_3601 716 TGCTTCTTGCCACAT-----TGGCGGACATTATCTTACCAGAGGGCAATA 760
BSNT_06144___ 749 --TGCTT-CAAGAA-------ACAATCGGGTTTGCAGATAAC-GGAGTTT 787
||.|| ||||.| || |||||...|.|| ||||| |.|.|
BPUM_3601 761 TGTGGTTCCAAGTATTCAAGTAC-ATCGGAGATCCA-ATAACAGCACT-- 806
BSNT_06144___ 788 TAGCTTTTATCAGATTGATTGGAAACGCATCGACTGCTATGATTATTTCG 837
|| ||||||.|| || |.||| |||.
BPUM_3601 807 --GC-----------TGATTGCAA---CA-----------GTTTA-TTCT 828
BSNT_06144___ 838 TTATTGGTCGCAGTC-------TATACAATGGGCATCAAGCGCAACA--- 877
||.|| ||||| |.|.||| ||.||.|..||..|||
BPUM_3601 829 TTCTT-----CAGTCTTGGCTTTGTGCAA--GGGATGAGCCGTGACAGGG 871
BSNT_06144___ 878 ----TTCC---AGTCAAAACCGTGA-TGGATTCTT--GTTCAACTGCCAT 917
|||| |||.| ||| || ||| ||.|||..|||
BPUM_3601 872 TGCTTTCCTTTAGTAA------TGAGTG----CTTAGGTCCAATCGCC-- 909
BSNT_06144___ 918 TTCACAAATCGGCATGATGCTTTTGATCATCGGAGGAGGCGGCGCCTTCA 967
|| |||..||||| .||||.||||.|||||||||.|||
BPUM_3601 910 --------TC--CATCTTGCTT---GTCATTGGAGCAGGCGGCGCTTTC- 945
BSNT_06144___ 968 AACAA-GTGCTGA-----TCAACGGCGGTGTCGGCGATTACGTAGCAGAC 1011
||||| |||||.| ||| ||||||||.|||||..|.||||||
BPUM_3601 946 AACAATGTGCTCATTGATTCA-----GGTGTCGGTGATTATATTGCAGAC 990
BSNT_06144___ 1012 TTATTCAAAGGAACGGCATTATCGCCAATCATTC---------------- 1045
|||..|||| || .|||||.|| |||
BPUM_3601 991 TTAGCCAAA-------CA--CTCGCCGAT--TTCACCGATTTTGCTTAGT 1029
BSNT_06144___ 1046 TGGC--ATGGCTCATCGCGGCGATCC---TGCGCATTTCTCTAGGATCAG 1090
|||| ||.||| ||||.|||.| || ||| ..||||||.|
BPUM_3601 1030 TGGCTGATTGCT----GCGGTGATTCGGGTG-GCA-----ACAGGATCTG 1069
BSNT_06144___ 1091 CGACTGT------------TGCCGCA------------CTAA--GCA-CA 1113
||||.|| .|||||| |.|| ||| ||
BPUM_3601 1070 CGACGGTATCCATGATGACGGCCGCAGGGATTGTAGCGCCAATTGCAGCA 1119
BSNT_06144___ 1114 ACAGGTCTGGTCATCCCGTTATTGGGCCATTCTGATGTTAACCTGGCGTT 1163
|| .||.||| |||||.|.|..||...|
BPUM_3601 1120 AC---------GATGCCG---------------GATGTGAGCAGGGAACT 1145
BSNT_06144___ 1164 AGTCGTGCTCGCAACAGGCGCCGGAAGTGTCATCGCT-------TCACAC 1206
..|.|||.|.||||||||.||.|| .|||.| ||.||.
BPUM_3601 1146 GCTTGTGTTAGCAACAGGAGCGGG-------TTCGTTAATTCTATCTCAT 1188
BSNT_06144___ 1207 GTCAATGACGCCGGCTTCTGGATGTTCAAGGAATACTTCGGATTAAGCAT 1256
|||||||||.|.||.||.|||.||.|||||||.||.||.||..|.|.|||
BPUM_3601 1189 GTCAATGACTCTGGTTTTTGGCTGATCAAGGAGTATTTTGGTATGACCAT 1238
BSNT_06144___ 1257 GAAAGAAACATTCGCCACATGGACATTGC--TGGAAACCATTATTTCCGT 1304
.|||||.||.||....|||||||| .|| ||||.||.||.||||||||
BPUM_3601 1239 AAAAGAGACGTTTTTGACATGGAC--GGCTATGGAGACGATCATTTCCGT 1286
BSNT_06144___ 1305 TGCTGGACTGGGATTCATT----TTATTGTTAAGTTTAGTTGTATGA- 1347
|..||...|.|.|||.||| |.|||..||.||||| ||| |
BPUM_3601 1287 TAGTGCTATTGCATTTATTATGATCATTAATATGTTTA----TAT-AG 1329
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