Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06143 and BPUM_3602

See Amino acid alignment / Visit BSNT_06143 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_06143___gntK.1.24716.seq
#    -bsequence dna-align/BPUM_3602___gntK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06143___gntK-BPUM_3602___gntK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06143___gntK-BPUM_3602___gntK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06143___gntK
# 2: BPUM_3602___gntK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1715
# Identity:     980/1715 (57.1%)
# Similarity:   980/1715 (57.1%)
# Gaps:         343/1715 (20.0%)
# Score: 2364.5
# 
#
#=======================================

BSNT_06143___      1 ATG-------ACTA----GTTATATGTTAGGAATCGATATCGGCACGACA     39
                     |||       ||.|    ||.||..|||     |.|||||.||.||.|||
BPUM_3602___g      1 ATGAAGGGGAACCAGGCGGTAATTGGTT-----TGGATATTGGAACAACA     45

BSNT_06143___     40 AGCACAAAAGCTGTGCTGT-------TCAGTGAAAACGGAGATGTGGTAC     82
                     ||.|||||.||.||.||||       ||||.|.|||       ||..||.
BPUM_3602___g     46 AGTACAAAGGCGGTTCTGTTTGGACCTCAGGGGAAA-------GTATTAG     88

BSNT_06143___     83 AGAAAGAAAGCA-TCGGCTACCC------GCTCTATACA--CCGGACATC    123
                     .|     ||||| ||.|.|  ||      |||| ||.||  ||   ||.|
BPUM_3602___g     89 CG-----AAGCATTCAGTT--CCTTATGAGCTC-ATTCAGCCC---CAGC    127

BSNT_06143___    124 TCAACA---GCTGAACAAAACCCGGAAGAGATATTTCAGGCAGTCATCCA    170
                      ||.||   |.|||.||..||||.||..|||||||..|.||.|||||   
BPUM_3602___g    128 -CAGCATGGGTTGAGCAGGACCCTGAGAAGATATTAGAAGCCGTCAT---    173

BSNT_06143___    171 TACAACAGCGAGA-----ATT-AC-AAAACAGCATCCCGA-AAAACAGAT    212
                     |.|||..|..|||     ||| || |||.|||||| ..|| |||..|.||
BPUM_3602___g    174 TGCAAGTGTAAGAGGTGCATTGACGAAAGCAGCAT-TTGATAAAGAAAAT    222

BSNT_06143___    213 CTCTTTCATTTCGTTCAGCAGCGCCAT--GCACAGCG----------TCA    250
                     ||          |.|..|||.||..||  |.||||||          |.|
BPUM_3602___g    223 CT----------GATAGGCATCGGAATAAGTACAGCGATGCATTCCTTAA    262

BSNT_06143___    251 TTGCAATCGACGAAAATGACAAGCCGCTGACG-CCATGCATCACATGGGC    299
                     |||..||.||..|..|||..|||.||.|.||| .|| |.||||..|||||
BPUM_3602___g    263 TTGTGATGGATCAGGATGGAAAGACGTTAACGAACA-GTATCATTTGGGC    311

BSNT_06143___    300 CGACAACCGAAGTGAAGGCTGGGCGCATAAG--------ATCAAAGAGGA    341
                     .||.|||.||||||.|        |.|.|||        ||||||...||
BPUM_3602___g    312 TGATAACAGAAGTGCA--------GAACAAGCGAAACGAATCAAATCAGA    353

BSNT_06143___    342 ATTGAACGG-----ACATGAGGTGTACAAACGTACGGGAACACCGATTCA    386
                     ..||.|.||     |||     |.||.|||.|.||.||.||||||||.||
BPUM_3602___g    354 TATGGATGGCTTCCACA-----TTTATAAAAGGACAGGTACACCGATCCA    398

BSNT_06143___    387 TCCGATGGCACCG--TTAAGTAAAATTGCCTGGATCACGAATGAAAGAAA    434
                     |||.|||.|||||  ||.|  |||||....|||       ||||||||||
BPUM_3602___g    399 TCCAATGTCACCGCTTTCA--AAAATACGGTGG-------ATGAAAGAAA    439

BSNT_06143___    435 AGAAATCG-----CTTC--CAAGGCA--AAAAAATATATCGGCATCAAAG    475
                     .|..|.||     ||||  .||||||  ||||..|||.|||  |||||||
BPUM_3602___g    440 TGGCACCGGATGTCTTCAAGAAGGCAGCAAAATTTATTTCG--ATCAAAG    487

BSNT_06143___    476 AATACATTTTTAAACAGCTGTTCAATGAGTATGTCATCGATTACTCCTTG    525
                     ||||.|||.||.|.||..|.|||..|.||||||||.|||||||.||..|.
BPUM_3602___g    488 AATATATTCTTTATCATTTCTTCGGTCAGTATGTCGTCGATTATTCAATC    537

BSNT_06143___    526 GCATCAGCGACAGGCATGAT-GAACCTGAAAGGCTTGGATTGGGACGAAG    574
                     ||.|||||.||.||..||.| .||...||||.|||| .|.|||||.||..
BPUM_3602___g    538 GCTTCAGCAACGGGACTGTTCCAATTGGAAACGCTT-CAATGGGATGAGA    586

BSNT_06143___    575 AGGCACTGCGCATCGCAGGCA-TCACGCCGGA-TCACTTATCCAAACTCG    622
                     ||||.||.||.||.||.||.| |.|.||  || |||..||||..|.||.|
BPUM_3602___g    587 AGGCGCTTCGTATTGCTGGAATTGAAGC--GAGTCAACTATCTGAGCTTG    634

BSNT_06143___    623 TGCCGA--------CAACCCAGATCTTTCAGCACTGCAGCACGGAAATAG    664
                     |.||.|        ||||..||       ||.|||.|||| |.||.||.|
BPUM_3602___g    635 TTCCAACGACGTATCAACTGAG-------AGGACTTCAGC-CAGAGATTG    676

BSNT_06143___    665 CGATCCAAATGGG-AATCGATCCGGAA---ACGCCTTTTGTCATCGGCGC    710
                     |..|.|..||||| |.|.||    |||   ||.||.||||||||.||.||
BPUM_3602___g    677 CACTGCGCATGGGCATTAGA----GAAGATACACCATTTGTCATTGGTGC    722

BSNT_06143___    711 CAGCGACGGCGTGCTGTCCAACCTCGGCGTCAACGCCATT----AAAAAG    756
                     .|..||.||.||.||..|.||..|.||.||....||.|||    ||    
BPUM_3602___g    723 GAATGATGGTGTTCTAGCGAATTTAGGTGTGGGTGCGATTGGTCAA----    768

BSNT_06143___    757 GGCGAAATCGCCGTCACCATCGGAACAAGCGGTGCCATCCGGACGATTAT    806
                     ||.||..|.||.||.||.|||||.|||||||||||..||||.||..||.|
BPUM_3602___g    769 GGAGAGGTGGCTGTTACGATCGGGACAAGCGGTGCGGTCCGTACAGTTGT    818

BSNT_06143___    807 TGACAAGCCGCAA--ACCGATGAAAAAGGGAGAATTTTTTGCTATGCCTT    854
                     .|||||.|  |||  ||.|||||..||...||||..||.|||||||||.|
BPUM_3602___g    819 AGACAAAC--CAATTACAGATGAGCAATCAAGAACGTTCTGCTATGCCCT    866

BSNT_06143___    855 GACGGACAAGCATTGGGTTATTGGGGGACCTGTGAACAATGGGGGCATCG    904
                     |||.||.||||||||||||.|.||.|||||....||.|||||.||.|||.
BPUM_3602___g    867 GACAGATAAGCATTGGGTTGTAGGAGGACCGACCAATAATGGCGGGATCA    916

BSNT_06143___    905 TCCTTCGCTGGATCAGAGACGAGTTTGCCTCCTCCGAAATCGAAACAGCG    954
                     |.||..|.|||.|.|..||.||.||.|..||.||.||..|.||...|||.
BPUM_3602___g    917 TGCTGAGGTGGTTGAAGGATGAATTCGGGTCGTCAGAGGTGGAGGTAGCA    966

BSNT_06143___    955 ACACGGCTGGGCATTGATCCATATGACGTGCTGACGAAAATTGCCCAACG   1004
                     |..||.||.||..|.||.||.|||||..||.|||.|.|.||.||..||..
BPUM_3602___g    967 AAGCGTCTAGGGGTGGACCCTTATGATCTGATGATGGATATCGCGGAAAA   1016

BSNT_06143___   1005 CGTCAGACCCGGTTCTGACGGTCTGCTGTTCCACCCATATCTCGCCGGAG   1054
                     .|||..|.|.||||||||.|||.|||||||.|..||||.|.|..|.||.|
BPUM_3602___g   1017 GGTCCCAGCTGGTTCTGAGGGTTTGCTGTTTCTACCATTTTTATCAGGTG   1066

BSNT_06143___   1055 AACGCGCTCCGTTGTGGAATCCGGATGTACGCGGCTCATTTT------TC   1098
                     |.||.||.||.|..||||||||..|||...|.|||.|.||||      ||
BPUM_3602___g   1067 AGCGTGCACCTTATTGGAATCCAAATGCGAGAGGCACCTTTTTTGGAATC   1116

BSNT_06143___   1099 GGCCTGACCATGTC-GCATAAGAAAGAGCATATGATACGCGCGGCATTGG   1147
                     |||||       || |||||||...||||||.|.||..|.||||..||.|
BPUM_3602___g   1117 GGCCT-------TCAGCATAAGCGGGAGCATTTTATTAGAGCGGTGTTAG   1159

BSNT_06143___   1148 AAGGCGTCATTTACAACCTGTAC----ACGGTGTTCTTGGCGTTAACTGA   1193
                     |||||||||||...|.|.|.|.|    .|||||||    ||.||||..||
BPUM_3602___g   1160 AAGGCGTCATTATGAGCGTTTTCTCGATCGGTGTT----GCCTTAAGAGA   1205

BSNT_06143___   1194 ATGCATGGATGGCCCGGTAACCCGCA-------TCCAAGCAACAGGGGGA   1236
                     .|..|        |||||  .|.|||       ||..|||..|.||.|||
BPUM_3602___g   1206 TTTAA--------CCGGT--TCAGCAAAGGATGTCAGAGCTTCGGGCGGA   1245

BSNT_06143___   1237 TTTGCAAGGTCGGAGGTTTGGCGCCAAATGATGTCGGATATCTTCGAAT-   1285
                     ||||||.|.||...|.|.|||||.|||||..|..||||||    || || 
BPUM_3602___g   1246 TTTGCACGATCTCCGCTATGGCGGCAAATTTTAGCGGATA----CG-ATG   1290

BSNT_06143___   1286 ----CAGAGGTTGTCGTTCCGGAAAGCTACGAA-----AGCTCATGTCTC   1326
                         .|||.||..|.|||||.|||||.||||||     |||.|.||   .
BPUM_3602___g   1291 GGTAGAGAAGTGCTAGTTCCAGAAAGTTACGAAGCGTCAGCACTTG---G   1337

BSNT_06143___   1327 GGCGCCTG-------------CATTTTAGGCCTGTATGCAACAG------   1357
                     ||||.|||             .|.||||||.| .||||.||.||      
BPUM_3602___g   1338 GGCGGCTGTCCTTGCACTTTATAGTTTAGGTC-ATATGGAAGAGATAGAA   1386

BSNT_06143___   1358 ------GAAAAATTGACTCTTTCGACGCCGTGTCCGACATGATCGGCAGC   1401
                           .||.|.|.||    |||||..|..||..||.|||||        
BPUM_3602___g   1387 GAGGTTCAAGAGTGGA----TTCGAATCTCTGCTCGTCATGA--------   1424

BSNT_06143___   1402 ACATACAGACATACGCCGATCGAAGACTCAGCCAAGGAA---TACAGAAC   1448
                     ||.||     |||       .|||||     .|||.|||   ||||    
BPUM_3602___g   1425 ACCTA-----ATA-------TGAAGA-----ACAATGAAACTTACA----   1453

BSNT_06143___   1449 ATTAATGCCGATTTTCATCAATCTATCAAGATTATTAGAAAATCAATATA   1498
                       ||..||.|.|||      ||.||       |||.||....||    ||
BPUM_3602___g   1454 --TAGAGCTGTTTT------ATTTA-------TATGAGCGCCTC----TA   1484

BSNT_06143___   1499 C-ACAAATTGCAG-----ATT-------ATCAGAGGG--GC--TTAATCA   1531
                     | |||||.||.||     |||       ||.||.|.|  ||  |||   |
BPUM_3602___g   1485 CGACAAACTGAAGGATGAATTTGATGTCATTAGCGCGCTGCAATTA---A   1531

BSNT_06143___   1532 CACACAAATAG----   1542
                     .||| ||||.|    
BPUM_3602___g   1532 AACA-AAATCGTTAA   1545


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