Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05163 and BPUM_3614
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_05163___yvfL.1.24716.seq
# -bsequence dna-align/BPUM_3614___yvfL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05163___yvfL-BPUM_3614___yvfL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05163___yvfL-BPUM_3614___yvfL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05163___yvfL
# 2: BPUM_3614___yvfL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1329
# Identity: 878/1329 (66.1%)
# Similarity: 878/1329 (66.1%)
# Gaps: 162/1329 (12.2%)
# Score: 2634.0
#
#
#=======================================
BSNT_05163___ 1 GTGCAGCATCGTCAAGTCGCTTTGT--TGCTTTCTATCATTCCGGGACTC 48
.||| |.|||| ||.||.|||.|.
BPUM_3614___y 1 ---------------------ATGTTCTCCTTT-----ATACCCGGAATG 24
BSNT_05163___ 49 GGGCAATTTTATAACAAGCA--ATGGATAAAAGGTATTGTCTTT-CTTTT 95
|||||..|.||.|||||.|| |.||..||..||.|.|.|.||| ||.||
BPUM_3614___y 25 GGGCAGATATACAACAAACAGTACGGCAAAGGGGCACTCTTTTTCCTGTT 74
BSNT_05163___ 96 CTTAGGCGCATCGTTTTTTG-CGGTCTTTGGAGATCTGCTCAATATGGGG 144
| ||||..|| ||||||| ..||.|||...|||.|..|||||||.||.
BPUM_3614___y 75 C---GGCGTCTC-TTTTTTGATTGTATTTTATGATTTATTCAATATTGGC 120
BSNT_05163___ 145 TTTTGGGGAATCTTTACACTGGGAACAGAAG-TGCCGCGGGATAATTCCG 193
||.||||||.|.||.||||||||.|| ||.| ||||.||.||.||.||.|
BPUM_3614___y 121 TTCTGGGGACTGTTCACACTGGGGAC-GATGCTGCCTCGTGACAACTCTG 169
BSNT_05163___ 194 TTTTTCTGCTGGCGGAAGGGATTATT--GCTGTCATCGTGACCTGCTTT- 240
|||||||..|.|||.|.|||||.||| |||||.|.| |.|||.|||
BPUM_3614___y 170 TTTTTCTTTTAGCGAAGGGGATCATTGCGCTGTTAAC---AGCTGGTTTT 216
BSNT_05163___ 241 ------GGCCTTGCGGTGTATTATGTAAATCTTCGCGATGCGTTCCAAAG 284
|||.|| ||..||.||..||||||| .|.|
BPUM_3614___y 217 GGTATCGGCTTT-------------TACGTCCTCATGATGCGT---GATG 250
BSNT_05163___ 285 C----------GGAAAACAACGTGATGAAAATAAG-----CCA-TTAAGT 318
| |||||..||||.||| .||| ||| ||.| |
BPUM_3614___y 251 CTTTTATGAATGGAAAGAAACGGGAT-----CAAGGGGTACCACTTCA-T 294
BSNT_05163___ 319 TCCTTAAAGGAACAATACCAGCATATCATTTCTGAGGGCTATCCTTATGT 368
|||.|....|..|||||.||.||..||||...|.|.||||..|||||..|
BPUM_3614___y 295 TCCATCCGTGCTCAATATCATCAGCTCATCGATCAAGGCTTCCCTTACTT 344
BSNT_05163___ 369 CGTCAGCGGCCCATCTT--TGTTTATTTTAATTTTCGCCGTGATCTTTCC 416
..|.|||...||..||| |.||||.||..||||| |.||..|||||||
BPUM_3614___y 345 AATGAGCACTCCTGCTTTCTTTTTACTTCTATTTT--CTGTTGTCTTTCC 392
BSNT_05163___ 417 TATCTTATTCAGCTTTGCATTAGCGTTTACAAACTATGATTTGTATCATT 466
|||..|.|||||||||||..|.||.|||||||||||||||||.||.||.|
BPUM_3614___y 393 TATTATGTTCAGCTTTGCGCTTGCCTTTACAAACTATGATTTATACCACT 442
BSNT_05163___ 467 CTCCTCCTGCAAAATTAATTGATTGGGTCGGTTTTCA-AACGTTCGCAAA 515
|.||||||||.||..|.|||||.|||||.||..||.| |||.||| .|||
BPUM_3614___y 443 CACCTCCTGCCAATCTGATTGACTGGGTAGGGATTAAGAACTTTC-AAAA 491
BSNT_05163___ 516 TA--TTTTCACAGTTGATATTTGGAG-GTCGACTTTTTTTGATGTAC-TG 561
|| ||||| || ||||||||||||| |.| ||.||..||||||||| ||
BPUM_3614___y 492 TATCTTTTC-CA-TTGATATTTGGAGAGAC-ACCTTCATTGATGTACTTG 538
BSNT_05163___ 562 GCTTGGACGGTGGTTTGGACACTT-GCTGCATCCACACTGCAA-GT-CAC 608
|| |||||.||.||.||||| ||| |||||.||.||.||.||| || |.|
BPUM_3614___y 539 GC-TGGACCGTCGTATGGAC-CTTGGCTGCGTCGACCCTTCAATGTGCCC 586
BSNT_05163___ 609 ATTGGGGATTTTTCTCGCGATCATTGTTAACCAGAAAGACCTTCGGTTT- 657
|.||.||.|||.|.|||.|..|..|.||.|||||.|| |||
BPUM_3614___y 587 --TCGGCATCTTTTTAGCGGTTCTGCTCAATCAGAAGGA-------TTTA 627
BSNT_05163___ 658 ------AAACGTTTTTTTCGGACGATTCTGATTTTGCCATGGGCCGTTCC 701
|||||.||||||.|.||.|||.|||||.|.||||||||.|||||
BPUM_3614___y 628 AAGGGAAAACGGTTTTTTAGAACCATTTTGATTCTTCCATGGGCTGTTCC 677
BSNT_05163___ 702 CGGTTTTGTGACGATTTTAATTTTTGCGGGACTGTTTAATGATAGCTTCG 751
.|||||||||||||||||..|.|||||.|||.||||.|||||||..||.|
BPUM_3614___y 678 AGGTTTTGTGACGATTTTGGTGTTTGCTGGATTGTTCAATGATACATTTG 727
BSNT_05163___ 752 GTGCGATGAATCACGACATCTTGGCTTT-CTTC----GGGATAGATCCGC 796
|.||.||.|| ||..||| ||| ||| |.|| |||||.|||||..
BPUM_3614___y 728 GGGCCATTAA-CAATACA-CTT---TTTGCATCGATAGGGATTGATCCAA 772
BSNT_05163___ 797 TTCCGTGGATGACAGATGCCAATTGGTCGAGGC----TTGCATTGATTCT 842
..||.|||.|||||||| |||.|| |.|| || ||||..|.|||..
BPUM_3614___y 773 AACCATGGCTGACAGAT-CCATTT--TGGA-GCAAAATTGCCCTCATTGC 818
BSNT_05163___ 843 CATGCAGGGCTGGCTTGGATTTCCGTACATCTTTC-TCGTCTCAACAGGC 891
.||||||...||||||||||||||.|.|.| |||| |..|..||||||||
BPUM_3614___y 819 GATGCAGACTTGGCTTGGATTTCCTTTCGT-TTTCATTATGACAACAGGC 867
BSNT_05163___ 892 GTATTGCAATCCATCCCGGACGATCTGTATGAAGCAGCTACGATTGATGG 941
||.|||||..|.||.||.||.||..|.|||||.|||||.||.||||||||
BPUM_3614___y 868 GTGTTGCAGGCGATTCCCGAGGACTTATATGAGGCAGCGACCATTGATGG 917
BSNT_05163___ 942 CGC----TTCTGTCTTTTCA-AAGTTGAGATACATCACGCTTCCAATGGT 986
.|| || |||||| ||.||..|.|.|||.|||.|.||..|.||
BPUM_3614___y 918 AGCCAATTT-----TTTTCAGAAATTCCGGTCCATTACGTTACCGTTAGT 962
BSNT_05163___ 987 -GTTCATTGCAATGGCTCCGATTATCATTACCCAGTTTACGTTTAATTTT 1035
.||.||| |.||.||.||.||..|.||.||.||.|.|||||||||.|||
BPUM_3614___y 963 CCTTTATT-CCATTGCGCCTATATTAATCACACAATATACGTTTAACTTT 1011
BSNT_05163___ 1036 AATAACTTTAATATTATCTATCTATTCAATGGTGGAGGTCCGGCTGTAAC 1085
||.|||||||||||.||||||.||||.|||||.||.||.|||.||||..|
BPUM_3614___y 1012 AACAACTTTAATATCATCTATTTATTTAATGGCGGGGGACCGCCTGTTGC 1061
BSNT_05163___ 1086 CGGATCAACAGCCGGCGGGACAGATATCCTCGTTTCATGGATTTATAAAT 1135
.||||||||.||.||.||.||.||.|||.|.||.||.||||||||||||.
BPUM_3614___y 1062 AGGATCAACCGCTGGGGGAACGGACATCTTGGTGTCTTGGATTTATAAAC 1111
BSNT_05163___ 1136 TGACAATGCAGTCCAGTCAATATTCTCTTGCTGCGGCTTTAACCATTTTA 1185
|.||.|||||||||..|||||||.|.||.|||||||||.|.||.||||||
BPUM_3614___y 1112 TCACGATGCAGTCCTCTCAATATGCACTCGCTGCGGCTGTCACGATTTTA 1161
BSNT_05163___ 1186 TTATCTGTATTTGTTATCTCCATCGCATTGTGGCAATTCAGACAG-ACAA 1234
.|.||..|.|||||.|||.||||.|||.|.|||||.||.| |.|| ||.|
BPUM_3614___y 1162 CTTTCAATCTTTGTCATCGCCATTGCACTCTGGCAGTTTA-AGAGAACGA 1210
BSNT_05163___ 1235 AGTCTTTTAAAGAGG-GGGCATAA----- 1257
|.||.||.||||||| ||.|||.|
BPUM_3614___y 1211 ATTCATTGAAAGAGGAGGACATGATGTGA 1239
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