Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01537 and BPUM_3621

See Amino acid alignment / Visit BSNT_01537 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_01537___yhcH.1.24716.seq
#    -bsequence dna-align/BPUM_3621___yhcH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01537___yhcH-BPUM_3621___yhcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01537___yhcH-BPUM_3621___yhcH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01537___yhcH
# 2: BPUM_3621___yhcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1067
# Identity:     598/1067 (56.0%)
# Similarity:   598/1067 (56.0%)
# Gaps:         286/1067 (26.8%)
# Score: 1499.5
# 
#
#=======================================

BSNT_01537___      1 ATGA-AAACAGTGTTGGAATTGAAAAACGTGACTAAAAACATCAGAGGC-     48
                     .||| .||| ||.||.|||.||.|.||.||..||           |||| 
BPUM_3621___y      1 GTGACGAAC-GTTTTAGAACTGCATAATGTATCT-----------AGGCA     38

BSNT_01537___     49 ------CG----AACGATCATTAATGATCTCAGTTTTACGATTCGTGAAG     88
                           ||    ||.||||.||.|.||..|.||.|||.|..|.|..|..|
BPUM_3621___y     39 TATTCACGGGAAAAAGATCGTTCAAGACTTGAGCTTTTCTGTCCAAGCGG     88

BSNT_01537___     89 GCGAGGTATTCGGTTTTTTAGGACCAAACGGAGCGGGGAAAACGACAACC    138
                     ||||.||.||.||.||.||||||||||||||.||.|||||||||||||||
BPUM_3621___y     89 GCGAAGTCTTTGGCTTCTTAGGACCAAACGGCGCAGGGAAAACGACAACC    138

BSNT_01537___    139 ATCCGGATGATGGTGGGGTT------AATGA-AGCTGTCGAAAGGTGATG    181
                     ||.||.||||||||.|||.|      |||.| |.||       |||||..
BPUM_3621___y    139 ATTCGTATGATGGTCGGGCTTTCTCCAATTACATCT-------GGTGACA    181

BSNT_01537___    182 TCCTCATT--TGCGGC--------CAATC--AATTACGAAAGAAT---AT    216
                     |.||.|||  || |||        |||||  .||..|   ||.||   ||
BPUM_3621___y    182 TTCTGATTAATG-GGCATAGTATTCAATCCTCATATC---AGCATGCCAT    227

BSNT_01537___    217 GCCAAGGCGATTAAGCATATTGGAGCGATCGTTGAGAATCCCGAGCTGTA    266
                      |||||.||          ||||.||.||..||||.||.||.||..||||
BPUM_3621___y    228 -CCAAGACG----------TTGGTGCCATTATTGAAAACCCAGAAATGTA    266

BSNT_01537___    267 TAA--ATTTTTGAGCGGATATA-AAAATCT-----------CCAG---CA    299
                     |||  ||||   |.|.|.||.| |||||||           ||||   .|
BPUM_3621___y    267 TAATCATTT---AACAGCTAGACAAAATCTTGTTCACTTTGCCAGAATGA    313

BSNT_01537___    300 ATACGCAA--GGATGGTCAAGGGTGTCACGAAGGAAAAAATTGATGAAGT    347
                     ||..|.||  |||||   |||||.|             |||||||| ||.
BPUM_3621___y    314 ATGGGAAAGTGGATG---AAGGGCG-------------AATTGATG-AGC    346

BSNT_01537___    348 TG-TTGAACTGGTCGGTTTAACAGACAGAATCCACGACAAGGTGAAAACA    396
                     || |.|||||.|||.|.||     ||||    |||      ||| |||||
BPUM_3621___y    347 TGCTAGAACTAGTCAGCTT-----ACAG----CAC------GTG-AAACA    380

BSNT_01537___    397 TA----------------TTCTCTGGGGATGAGACAGCGTCTTGGCTTGG    430
                     ||                |||..|.||.||||..||||||.|.||..|.|
BPUM_3621___y    381 TAAGCGTGTCCGAACGTTTTCATTAGGAATGAAGCAGCGTTTAGGTATTG    430

BSNT_01537___    431 CACAATGCCTTCTGCAC-GAT-------CCGAAAGTGCTGATTTTGGATG    472
                     |.|||        |||| |||       ||||||.|||||||.||.||||
BPUM_3621___y    431 CGCAA--------GCACTGATACATAGACCGAAACTGCTGATATTAGATG    472

BSNT_01537___    473 AACCGACAAACGGCCTTGATCCGGCGGGGAT---CA-GAGAAATCAGAGA    518
                     |.|||||.||.||.||||||||.|.|||.||   || |    ||..||||
BPUM_3621___y    473 AGCCGACCAATGGACTTGATCCAGAGGGAATTCGCATG----ATACGAGA    518

BSNT_01537___    519 TCATTTAAAGAAG--CTGACCCGAGAAAG-AGGAATGGCTGTCATCGTTT    565
                     |.|.|| .|||||  .||  |..||.||| |||..|.|||||.||.||||
BPUM_3621___y    519 TTACTT-GAGAAGGCTTG--CAAAGGAAGAAGGGCTAGCTGTTATTGTTT    565

BSNT_01537___    566 CAAGCCACCTGCTGTCAGAAATGGAACTGATGTGTGATCGAATTGCGATT    615
                     ||||.||.||..||||||||||||||.||||||||||.||..||||||||
BPUM_3621___y    566 CAAGTCATCTCATGTCAGAAATGGAATTGATGTGTGACCGTTTTGCGATT    615

BSNT_01537___    616 CTGCAAAAAGGAAAGCTGATCGATATTCAAAAT----GT-AAAAGATGAA    660
                     .|.||||||||.||||||||.|..|||.|..||    || .|.|||.|| 
BPUM_3621___y    616 ATCCAAAAAGGCAAGCTGATTGCGATTGAGGATCAGCGTGCAGAGACGA-    664

BSNT_01537___    661 AACATTGATGAGAACGA--TA--CA--TATTTCTTCCAGGTTGAGCAGCC    704
                            |..||.||||  ||  ||  |||                   |
BPUM_3621___y    665 -------ACCAGGACGAATTAGTCAATTAT-------------------C    688

BSNT_01537___    705 GAATGAA-GCCGCTGCTGTT-----------------TTAAATCA---GT    733
                     ||||||| |.||||.|||.|                 ..||.|||   ||
BPUM_3621___y    689 GAATGAAGGTCGCTTCTGATGAACTGGAAGAAACGAAGAAACTCATTGGT    738

BSNT_01537___    734 ACGATTTGCTGA----------GTAAGACAAATGGTGTAGAAATCAAAC-    772
                     | .|||||..||          ||||||.||..||.|.||.|.|.|..| 
BPUM_3621___y    739 A-TATTTGAGGAAGGCACGACTGTAAGAGAAGAGGAGCAGTATTTATTCT    787

BSNT_01537___    773 ------TGGCTAAAGACGAAGTCCCTGCGGTTATTGA------ATTGCTG    810
                           ||||..||||..||    .|||.|..|||||      |||    
BPUM_3621___y    788 TCTCCTTGGCAGAAGAGAAA----ATGCCGGAATTGATTCGTCATT----    829

BSNT_01537___    811 GTGATGCAGCAAATCCGT--ATT--TATGAGGTCAAGGT--TATAACAAA    854
                      ||| ||.||...|||.|  |||  ||.||..||||..|  .|.||||||
BPUM_3621___y    830 -TGA-GCGGCGCGTCCATTCATTTGTACGAAATCAAAATAGAAAAACAAA    877

BSNT_01537___    855 ATCATTAGAGGACCGTTTCTTAGAAATGACAGGTGAAACAAAAGAGGAGG    904
                       |.|||||.||....||||||....|.||||||      |||.||||||
BPUM_3621___y    878 --CCTTAGAAGATAAGTTCTTAAGCTTAACAGGT------AAAAAGGAGG    919

BSNT_01537___    905 TTCA---GCATGCTTAA    918
                       ||   |.|||.    
BPUM_3621___y    920 --CAGACGTATGA----    930


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