Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01536 and BPUM_3623

See Amino acid alignment / Visit BSNT_01536 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_01536___yhcG.1.24716.seq
#    -bsequence dna-align/BPUM_3623.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01536___yhcG-BPUM_3623.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01536___yhcG-BPUM_3623.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01536___yhcG
# 2: BPUM_3623
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity:     439/1013 (43.3%)
# Similarity:   439/1013 (43.3%)
# Gaps:         433/1013 (42.7%)
# Score: 732.5
# 
#
#=======================================

BSNT_01536___      1 ATGGAAATCAAGCTAGAACATGTATCAAAAAAATACGGCCGCCAT---AC     47
                     |||   ||..||.|||||.|.||..|||||||          |||   | 
BPUM_3623          1 ATG---ATTGAGGTAGAAAAAGTTACAAAAAA----------CATTAAA-     36

BSNT_01536___     48 GGCCGTCAA-TGATGTGTCAATCAC-------CCTATC------------     77
                          |||| |||      ||| ||       |.||||            
BPUM_3623         37 -----TCAACTGA------AAT-ACTAAAAGGCATATCTTTTAGTTTAAG     74

BSNT_01536___     78 ATCCGGACGGAT-TTATGGCCTGATCGGACCGAACGGCAGC-GGCAAGTC    125
                     |...|||..||| ||| ||..|..|.||.||.||||| ||| ||.||   
BPUM_3623         75 AAGTGGAGAGATATTA-GGTTTACTAGGTCCAAACGG-AGCTGGGAA---    119

BSNT_01536___    126 AACGACCCTGAAAATGATGGCT------GGCCTTCTGTTTCCGACTTC--    167
                     |||.||..||   ||||.|.||      ||||||         ||.||  
BPUM_3623        120 AACCACTTTG---ATGAGGACTATTTTGGGCCTT---------ACATCAA    157

BSNT_01536___    168 -------AGG---------ATTT----GTGAAAGT-TGATGAAGAGCA--    194
                            |||         ||||    ||.|.||| |.|||||||..|  
BPUM_3623        158 TAAGTAAAGGAGACATAAAATTTAAAGGTAATAGTATTATGAAGAATAAT    207

BSNT_01536___    195 -------GGTTACGAGAGAAAT-GGTGCGTCAA-----ACGGC------T    225
                            ..|||  ||||||.| |||||.|.||     ||..|      |
BPUM_3623        208 AATTTTTTTTTA--AGAGAAGTAGGTGCTTTAATTGAGACCCCTAAATTT    255

BSNT_01536___    226 TAT-CTTACTGAGCTTGATATG---TTTTATCCGCATTTCA--CTGTTAA    269
                     ||| ||.|.|.|.||.||||||   ..|||| |..|||.||  .|.||||
BPUM_3623        256 TATCCTGATTTATCTGGATATGAAAACTTAT-CTTATTACAATATATTAA    304

BSNT_01536___    270 A----------------------GATATGGTGAATT--------------    283
                     |                      ||.||..||||.|              
BPUM_3623        305 ATAATAGAAAAGCTGATGTACACGAAATAATGAACTCTCTTGGATTAGGA    354

BSNT_01536___    284 -TTTATCAGTCGCAGTTTCCTGATTTTCAAA------------------C    314
                      .||||       ||.|.|||.|...|.|||                  .
BPUM_3623        355 GATTAT-------AGATACCTTAAAGTAAAAAAATACTCTTTAGGTATGA    397

BSNT_01536___    315 AGAACAGGCTT----------------------ATAAGC-----------    331
                     ||.|.||||||                      ||||||           
BPUM_3623        398 AGCAAAGGCTTGGAATAGCCCAAGCAATTATGCATAAGCCGCAAGTTTTA    447

BSNT_01536___    332 -TATTG--------AATGAGATGCAGCTGAATCC----GGAAAAAAAGAT    368
                      |.|||        ||||| |||| |||..||||    ||||.|||| .|
BPUM_3623        448 ATTTTGGATGAACCAATGA-ATGC-GCTCGATCCATCAGGAATAAAA-TT    494

BSNT_01536___    369 C--AAAAAGCTATCAAAAGGAAATCGGGGCCGGCTGAAAAT---CGTTC-    412
                     |  |||||..|| ||.||..||||      ..|.|||||||   .|.|| 
BPUM_3623        495 CTTAAAAAAATA-CATAAAAAAAT------TTGTTGAAAATAAGGGATCA    537

BSNT_01536___    413 -TTGCTTTAGCGAGACGGGCAGACGTCATC--------------------    441
                      ||..|.||.|||           ||||||                    
BPUM_3623        538 GTTATTATATCGA-----------GTCATCTAATTTCTGAAATTGAATCC    576

BSNT_01536___    442 ------------GTGCTT---------------GATG-------------    451
                                 ||.|||               ||||             
BPUM_3623        577 ATATGTGATAAAGTCCTTATAATTGATAAAGGAGATGTGAAAAAAAGTAT    626

BSNT_01536___    452 AACC------------TTTT-----TCCGGGCTTGATCCGATGGTCA---    481
                     ||.|            ||||     ||||||.||..|.|.||  |||   
BPUM_3623        627 AATCATAGATGGGGATTTTTCTCAATCCGGGATTTTTTCTAT--TCAAGT    674

BSNT_01536___    482 --------GGGATTCCATCGTAAACAGCCTTGTGTCGTA-CATTGATTTT    522
                             .|||||      ||||      ||.|.|.|| .|||.|||  
BPUM_3623        675 TGGAAAACTGGATT------TAAA------TGAGGCTTATAATTTATT--    710

BSNT_01536___    523 GAGCAGCAGATTGTCGTGATCGCGACACATGAAAT------TGATGAAAT    566
                         |..|||.|.|..|.||...|.||.|..||||      .|||.||.|
BPUM_3623        711 ----AAAAGAATTTACTAATAAAGCCATAATAAATAAGAGACGATCAACT    756

BSNT_01536___    567 TGAGACTTT------------GTTAGA----CGAAGT--AATCATCC--T    596
                     |.|||..||            |.||||    |.||||  |.|.||.|  |
BPUM_3623        757 TTAGAGCTTAGCTGCTCTAAGGATAGAATACCTAAGTTAATTTATACGTT    806

BSNT_01536___    597 CGCCAATGGAGAAAAAGTTGCGCAG--CGTGAAGTA--GAAGATATTCGT    642
                          ||..||||||..|..|.|||  ..|||||||  ||||.||    .
BPUM_3623        807 -----ATTAAGAAAAGATATCCCAGTTTATGAAGTAAGGAAGTTA----A    847

BSNT_01536___    643 GAACA-----GGAAGGCATGTCTGTTTTGCAATGGTTTAAATCAAAAAT-    686
                     |||||     |||||  |.||.|.|||  ||||.||        |.|.| 
BPUM_3623        848 GAACACCTTTGGAAG--AAGTTTATTT--CAATAGT--------ATAGTG    885

BSNT_01536___    687 GGAAGTTTGCTAG    699
                     |||||||.|    
BPUM_3623        886 GGAAGTTAG----    894


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