Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01316 and BPUM_3657
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:54
# Commandline: needle
# -asequence dna-align/BSNT_01316___yfkL.1.24716.seq
# -bsequence dna-align/BPUM_3657___yfkL2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01316___yfkL-BPUM_3657___yfkL2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01316___yfkL-BPUM_3657___yfkL2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01316___yfkL
# 2: BPUM_3657___yfkL2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1328
# Identity: 764/1328 (57.5%)
# Similarity: 764/1328 (57.5%)
# Gaps: 271/1328 (20.4%)
# Score: 1924.5
#
#
#=======================================
BSNT_01316___ 1 ATGCAAACGACATC----TATCAAAACAGCATCCGGAATGTATATCAACT 46
||| |.|| ||| |.|.|.|||.||.||..|..|.|||||.||.|
BPUM_3657___y 1 ATG---AGGA-ATCCGTATGTGAGAACGGCTTCTAGTCTATATATGAATT 46
BSNT_01316___ 47 ACTTCTTTCTGGGGATGGTCAACATCATTCTCGCATCCAATATGTCTTCA 96
||||.||..|.||.||||||||.||||||.|.||.|||||||||.|.|..
BPUM_3657___y 47 ACTTTTTATTAGGTATGGTCAATATCATTTTGGCTTCCAATATGCCATTT 96
BSNT_01316___ 97 TTAACAAAACAGTGGAATACCGATCCGACCGGCATCAGTTATGTCATTGC 146
||||..|||||||...||||..||....|.||.||.||||||.|.|||.|
BPUM_3657___y 97 TTAATCAAACAGTTAGATACAAATAGTGCAGGAATTAGTTATATGATTTC 146
BSNT_01316___ 147 CGCTATCGGGTTTGGCAAACTGCTGACATACGGCATTTCCGGCGTTCTAT 196
.|||.|.||..||||.|...||||.||.||.||..|.||.||.|||||||
BPUM_3657___y 147 GGCTCTTGGCATTGGTAGGGTGCTCACGTATGGTTTATCGGGTGTTCTAT 196
BSNT_01316___ 197 CAGATAAAATCGGCAGAAAGCC-----GCTTGTTGTCGCTTCTGCGGGAA 241
|||||....|.||..||||||| ..|||.|.|||..|.|||
BPUM_3657___y 197 CAGATCGTTTTGGGCGAAAGCCTGTCATTTTGGTTTCGGGTGTGC----- 241
BSNT_01316___ 242 TTATGGCCGTCTTTTTAGTCGGTATTCCTTTATCACCGAGCTATGAGCTG 291
|.|||||.||.||..|..||||.|||||.||.||.||.|..|||.|..|.
BPUM_3657___y 242 TGATGGCTGTGTTCCTCATCGGAATTCCGTTGTCTCCAAATTATCAAATC 291
BSNT_01316___ 292 GCGTTTGTGTTCGCCTTATTAGCCGGAGTCGCAAATTCAGCGATGGATGC 341
|||||||..||.|||.|.||.||.||.|||||.|||||.||.|||||.||
BPUM_3657___y 292 GCGTTTGCATTTGCCATTTTGGCAGGGGTCGCGAATTCGGCAATGGACGC 341
BSNT_01316___ 342 CGGAACATATCCGGCCCTAACCGA-GCTCTTTCCGTCTGC----TTCCGG 386
.|||||.|||||.||..|||..|| ||| ||||| || .||.||
BPUM_3657___y 342 AGGAACGTATCCTGCATTAATGGAGGCT-TTTCC----GCAAAACTCGGG 386
BSNT_01316___ 387 TTCGGCGAATGTCTTGGTCAAAGCCTTTATGTCTGTCGGGGCCGCACTTT 436
.||.||||||||..||||.||.||||||||.||..|.|||||..|..|||
BPUM_3657___y 387 ATCTGCGAATGTGATGGTGAAGGCCTTTATATCCATTGGGGCAACTATTT 436
BSNT_01316___ 437 TGCCGCTTTTGATCACATTTTTAGCAGACCACAGCA-----TGTTTTACG 481
||||.|||..|||....|||||.|||| |||| |||||||.|
BPUM_3657___y 437 TGCCACTTGCGATTTTCTTTTTGGCAG-----AGCATGATTTGTTTTATG 481
BSNT_01316___ 482 GATTTGCTTTTTATCTGCCGGCAGCGGTCTATCTCCTGAATATTATTTAT 531
||.|.||.||||.|.|.||.||...|.|||||||..||||| .|.||.||
BPUM_3657___y 482 GAATGGCATTTTTTGTTCCTGCTCTGATCTATCTTGTGAAT-GTCTTGAT 530
BSNT_01316___ 532 -TTATCAACGCTT-TCGTTTCCTAAAAAACAT---AAG--------AAAC 568
.|||..|| ||| .|.||||| |||.||| ||| |..|
BPUM_3657___y 531 GCTATGGAC-CTTGCCATTTCC---AAATCATCGCAAGGTGGAACAAGTC 576
BSNT_01316___ 569 CAACTAATAGCGGCCAACAGGA---ATCTCCCG-TTTTCTTGTCTGAACC 614
||..||| ||| |.||||| | ||.||| ..||||.|.|.||.||
BPUM_3657___y 577 CAGGTAA---CGG--AGCAGGACGGA-CTTCCGCGCTTCTCGACAGAGCC 620
BSNT_01316___ 615 --CGTTTTTCAGAAAGAAGGCACCGCACTGATTATCATCGGTTTTACATC 662
|.|||| .||.||||||....||.||.|||||.|||.|.|||||.||
BPUM_3657___y 621 TACATTTT--GGAGAGAAGGGGTGGCGCTCATTATGATCAGCTTTACGTC 668
BSNT_01316___ 663 CACGGCTTTATTTACGGTTTCTCAAATCTGGCTCCCGAGCTACG----CG 708
.|..|..||||.|.||.|..|.|||||.|||||.||.|..|||| .|
BPUM_3657___y 669 AAATGGGTTATATGCGTTGCCGCAAATATGGCTTCCTACTTACGGTGAGG 718
BSNT_01316___ 709 CAAAAAGCAGCCGGTT---TAGCTGA-ATC-AGCA--TCTGTACAACTGC 751
|.|.| || || ||| ||| .||| .||||..||||||
BPUM_3657___y 719 CCATA---------TTGGGTA--TGACATCGGGCAGTGCTGTGAAACTGC 757
BSNT_01316___ 752 TGAGCTATTATAGTATAGGATCTCTGGCATCTGT---------------- 785
|.||.||.|||||.||.|| |.|||..||||
BPUM_3657___y 758 TCAGTTACTATAGCATGGG----CGGGCTGCTGTCTGTCGTGATGCTCGC 803
BSNT_01316___ 786 -TTTATTATTAGCCGTTTTG-CTGAACAGATGGGTCAAACCTGT-CTTCA 832
|||.|..|..||||||||| |.|..| ||||| |||| ||
BPUM_3657___y 804 ATTTCTGTTGCGCCGTTTTGTCCGTCC-----GGTCA---CTGTGCT--- 842
BSNT_01316___ 833 TAACGCTCTTATATCCTATTATTAC-----------TTTATGTACGCTCG 871
|||..|.|||||.||.||||| |||.|||||.||.|
BPUM_3657___y 843 ----GCTGATCTATCCAATCATTACACTAGTTTCTATTTGTGTACTCTTG 888
BSNT_01316___ 872 CAGTCATGCTGACCGTTCACATCCCAGTTGTGCT-GGA--CATCACTGCC 918
|||.|| |.|||||.| ||..| ||| |.|||.|||.
BPUM_3657___y 889 --GTCGTG----------AAATCCCCG--GTCATCGGAACCGTCAATGCT 924
BSNT_01316___ 919 TTTTTCTTAGGCTTTTCAACTGCGGGTGTGTTTCAAATTACCATTACGTT 968
|||.|.||.||.||||||||.||.||.||.|||||..|.||..|.||..|
BPUM_3657___y 925 TTTATATTGGGATTTTCAACAGCAGGAGTTTTTCAGCTGACGTTAACTGT 974
BSNT_01316___ 969 AATGACAGAGCTTTTCTGGAAGCGAAAAGGAACCGTTACCGGAATT---- 1014
.|||.|.||..||||||||||....|||||.||..|.||.||.|||
BPUM_3657___y 975 GATGGCTGAATTTTTCTGGAAAAACAAAGGGACGATGACAGGGATTATTT 1024
BSNT_01316___ 1015 ---------GTAGC--GACCGCT-TCAAGTCTTGCATCGATTCTGCTGCC 1052
||.|| |.|.||| || || |||| ||
BPUM_3657___y 1025 CCACAGCGGGTGGCGTGTCGGCTATC--GT----CATC----------CC 1058
BSNT_01316___ 1053 GATTGCAACAGGGCTTATCGCAAAAGCGGGGGGCA-TCGCTCAT------ 1095
..|.|.|||| ||||||...|| |.|.|| |||..|||
BPUM_3657___y 1059 AGTCGTAACA-GGCTTAATTCA-------GAGTCACTCGTCCATTTTACA 1100
BSNT_01316___ 1096 -ATTTTCATATTCGACT-------TCGCCATTGCGG---TTATCGGAACG 1134
|||||.||.||||| | |.||..|||||| |||||||
BPUM_3657___y 1101 AATTTTTATGTTCGA-TGCAGTGGTGGCTGTTGCGGCTATTATCGG---- 1145
BSNT_01316___ 1135 GCTGCAGCTGCTTTCT------TGTAT---TAC----------AGGTACA 1165
.|||||.| ||||| ||| .|||.||
BPUM_3657___y 1146 --------CGCTTTGTATATTCTGTATCGATACCGCCAAATCATGGTCCA 1187
BSNT_01316___ 1166 AGA--AACTGACAGGTGCTCAAGCCTAA 1191
.|| ||
BPUM_3657___y 1188 TGATTAA--------------------- 1194
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