Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06150 and BPUM_3663

See Amino acid alignment / Visit BSNT_06150 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_06150___yydK.1.24716.seq
#    -bsequence dna-align/BPUM_3663___yydK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06150___yydK-BPUM_3663___yydK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06150___yydK-BPUM_3663___yydK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06150___yydK
# 2: BPUM_3663___yydK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 735
# Identity:     497/735 (67.6%)
# Similarity:   497/735 (67.6%)
# Gaps:          48/735 ( 6.5%)
# Score: 1473.0
# 
#
#=======================================

BSNT_06150___      1 ATGTTAAAATACCAGCAAATCGC-AGCGGAAATTGAAACATATATAGAAG     49
                     ||||||||.||.||.|||||.|| ||| ||.|||||||.||||||.|   
BPUM_3663___y      1 ATGTTAAAGTATCAACAAATTGCGAGC-GATATTGAAAAATATATTG---     46

BSNT_06150___     50 AACACC----AGCTTCAGCAGGGAGACAAACTGCCAGTCCTGGAAACCCT     95
                      .||||    ||||.|||||.||||||||.||.||.||.||.||||||||
BPUM_3663___y     47 -TCACCCATGAGCTACAGCAAGGAGACAAGCTTCCTGTACTCGAAACCCT     95

BSNT_06150___     96 CATGGCCCAGTTTGAAGTCAGCAAAAGCACAATTA-CAAAGTCCCTCGAG    144
                     ||||..|||.||||..||.|||||||||||.|||| |||| ||..|.||.
BPUM_3663___y     96 CATGAGCCAATTTGCTGTGAGCAAAAGCACCATTATCAAA-TCATTAGAC    144

BSNT_06150___    145 CTATTAGAGCAAAAAGGCGCGATCTTTCAAGTCAGAGGAAGCGGCATTTT    194
                     .||.|.||...||||||....||||.||||||.||.||.||||||||.||
BPUM_3663___y    145 TTACTCGAAAGAAAAGGAATTATCTATCAAGTGAGGGGCAGCGGCATCTT    194

BSNT_06150___    195 CGTCAGAAAACATAAACGAAAAGGCTATATCAGCCTTCTGTCGAATCAGG    244
                     .||..|||.|||.|.|||.||.|||||.|||||||||.|.||.||.||.|
BPUM_3663___y    195 TGTTCGAAGACACAGACGCAAGGGCTACATCAGCCTTTTATCCAACCAAG    244

BSNT_06150___    245 GGTTTAAAAAAGATCTCGAGGA-TTTCAACGTCACCTCAAAAGTCATCGA    293
                     ||||||||||||||.|.||||| ||||||| |.||.|||.|.||  |..|
BPUM_3663___y    245 GGTTTAAAAAAGATTTAGAGGAGTTTCAAC-TGACATCAGAGGT--TTTA    291

BSNT_06150___    294 A--CTGGACGTGAGAAAGCCGACACCG--GAAGCGGCGGAAAATCTGAAC    339
                     |  ||||||...|..||.|||  .|||  |||||.|||...|||.||||.
BPUM_3663___y    292 ATGCTGGACACCATCAAACCG--CCCGAAGAAGCAGCGCTTAATTTGAAT    339

BSNT_06150___    340 ATCGAAATAAACGAAGACATCTACTATGTCAAAAGGGTCCGCTACATCAA    389
                     ||.|||..|.|.||.||..|.|..||..|||||.|..||||.||.|||||
BPUM_3663___y    340 ATTGAAGAAGAAGAGGATGTTTTTTACCTCAAACGCATCCGTTATATCAA    389

BSNT_06150___    390 CGGCCAGACCCTTTG-CTACGAAGAATCCTATTACAACAAATCCATCGTG    438
                     .||.||.|||.|.|| ||| |||||||||||||||...|||.|||||.|.
BPUM_3663___y    390 TGGACAAACCTTATGTCTA-GAAGAATCCTATTACCGAAAAACCATCATT    438

BSNT_06150___    439 ACGTATTTAAACAACGAAATCGTTTCCCACTCCATCTTCCATTACATCCG    488
                     .|.|||.|.||||..|||||.|...||.|.||..|.||..|.|..||..|
BPUM_3663___y    439 CCCTATCTCAACACAGAAATTGCCGCCGATTCTGTTTTTAAATTTATAAG    488

BSNT_06150___    489 GGAAGGACTGGGGTTGAAGATTGGTTTTTCTGATTTGTTTCTGCACGTGG    538
                     .|||||.||.|||.|.||..|.||.|||||.|||.|||...||||.||.|
BPUM_3663___y    489 TGAAGGCCTTGGGCTCAAAGTCGGCTTTTCCGATATGTACTTGCAAGTAG    538

BSNT_06150___    539 GCCAGCTTAATGAGGAA--GAAGCGGAATA-TTTGGGATTAGAGGCTGGA    585
                     |..|.||.|||||  ||  |||||..||.| .|.||..|||.|  |..||
BPUM_3663___y    539 GAAAACTGAATGA--AACCGAAGCAAAACACCTCGGCCTTAAA--CAAGA    584

BSNT_06150___    586 C--TGCCGAAGCT------GTATATAGAAAGTATTTTTCACCTGACAAAT    627
                     |  |.||   |||      |    |.||||...|.|||||.||.|||||.
BPUM_3663___y    585 CGATCCC---GCTCTCCGCG----TCGAAACCGTCTTTCATCTCACAAAC    627

BSNT_06150___    628 GGGCAGCCGTTTGATTACTCGAAGATTTCGTATAATTATGAGCAGTCGCA    677
                     ||.|||||.||.||.|.||||||.||..|.|||||.||...|||.||.||
BPUM_3663___y    628 GGCCAGCCTTTCGACTTCTCGAAAATCACATATAACTACATGCAATCCCA    677

BSNT_06150___    678 GTTTGTGGTGCAGGCTAATAGTTTTTTAT-TGTGA    711
                     .|||.|..|.|||||.|||| .||.|||| .||||
BPUM_3663___y    678 ATTTTTTATTCAGGCGAATA-ATTATTATGGGTGA    711


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