Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06172 and BPUM_3676

See Amino acid alignment / Visit BSNT_06172 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_06172___yydA.1.24716.seq
#    -bsequence dna-align/BPUM_3676___yydA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06172___yydA-BPUM_3676___yydA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06172___yydA-BPUM_3676___yydA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06172___yydA
# 2: BPUM_3676___yydA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 483
# Identity:     395/483 (81.8%)
# Similarity:   395/483 (81.8%)
# Gaps:           6/483 ( 1.2%)
# Score: 1606.0
# 
#
#=======================================

BSNT_06172___      1 GTGAATATCAAT--ATTGTGACAATCGGAAAACTAAAAGAAAAATACCTC     48
                     ||||||||  ||  |||.|.|||.|.||||||.|||||||.|||||..|.
BPUM_3676___y      1 GTGAATAT--ATCAATTATCACAGTAGGAAAATTAAAAGAGAAATATTTA     48

BSNT_06172___     49 AAACAAGGCATTGAAGAATACACCAAACGACTTTC-GGCCTACGCAAAAA     97
                     ||.||||||||.|..||||||||.|||||| ||.| |||.||.||.||||
BPUM_3676___y     49 AAGCAAGGCATAGCCGAATACACAAAACGA-TTACAGGCTTATGCGAAAA     97

BSNT_06172___     98 TCGACATCATCGAACTCCCGGACGAAAAAGCGCCGGAAAACCTAAGCGAC    147
                     ||||||||||.||||||.|.|||||||||||.||.|||.||||.||.||.
BPUM_3676___y     98 TCGACATCATTGAACTCGCAGACGAAAAAGCACCAGAACACCTCAGTGAG    147

BSNT_06172___    148 CAGGACATGAAAATCATAAAAGACAAAGAAGGCGACCGCATCCTATCAAA    197
                     ||.||||||||||||||.|||||||||||||||||.|||||||||...||
BPUM_3676___y    148 CAAGACATGAAAATCATCAAAGACAAAGAAGGCGAACGCATCCTAAGCAA    197

BSNT_06172___    198 AATCAGCCCCGACGCCCACGTCATCGCCCTCGCCATCGAAGGAAAAATGA    247
                     |||||.|||.||||||||||||||||||||||||||||||||||||||||
BPUM_3676___y    198 AATCAACCCAGACGCCCACGTCATCGCCCTCGCCATCGAAGGAAAAATGA    247

BSNT_06172___    248 AAACATCCGAAGAACTAGCCGATACAATAGATAAGCTGGCGACATATGGA    297
                     ||||.|||||||||.|||||||||||||||||||||||||.|||||.|||
BPUM_3676___y    248 AAACTTCCGAAGAATTAGCCGATACAATAGATAAGCTGGCAACATACGGA    297

BSNT_06172___    298 AAAAGCAAAGTCACCTTCGTCATCGGCGGATCACTCGGATTGAGCGACGC    347
                     ||||||||.||....||.||.||.|||||.||.||.|||||.|||||.||
BPUM_3676___y    298 AAAAGCAAGGTGTGTTTTGTGATAGGCGGGTCGCTTGGATTAAGCGATGC    347

BSNT_06172___    348 GGTAATGAAGCGAGCGGATGAGAAGCTGTCATTCTCGAAAATGACGTTCC    397
                     .||.|||.||||.|||.||||||||.||||.||.||||..||||||||||
BPUM_3676___y    348 TGTCATGCAGCGTGCGAATGAGAAGTTGTCGTTTTCGAGGATGACGTTCC    397

BSNT_06172___    398 CTCATCAGTTGATGCGGCTCATACTAGTGGAGCAGATTTATCGGGCTTTT    447
                     |.||||||||||||.||.|..|..|.|||||||||.|||||||.||.|||
BPUM_3676___y    398 CGCATCAGTTGATGAGGTTGGTGTTGGTGGAGCAGGTTTATCGAGCGTTT    447

BSNT_06172___    448 CGGATTAATCGTGGGGAACCGTATCACAAATAG    480
                     ||||||...||.|||||.||.|||||.||.||.
BPUM_3676___y    448 CGGATTGTGCGGGGGGAGCCTTATCATAAGTAA    480


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