Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06195 and BPUM_3684

See Amino acid alignment / Visit BSNT_06195 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_06195___yyxA.1.24716.seq
#    -bsequence dna-align/BPUM_3684___yyxA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06195___yyxA-BPUM_3684___yyxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06195___yyxA-BPUM_3684___yyxA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06195___yyxA
# 2: BPUM_3684___yyxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1253
# Identity:     876/1253 (69.9%)
# Similarity:   876/1253 (69.9%)
# Gaps:         115/1253 ( 9.2%)
# Score: 2905.5
# 
#
#=======================================

BSNT_06195___      1 ATGGTGGATTACGAACGTGAGGAAGAACATACTACTCCTGAACAGCCAAA     50
                        |||||||   |.||.||.|.|||           .||.| |||| .|
BPUM_3684___y      1 ---GTGGATT---ATCGCGATGTAGA-----------GTGGA-AGCC-GA     31

BSNT_06195___     51 GA-GAAGCAAAAAAGGATATTTTCTTTCGAGTCTGATTGGCGTGATT-GT     98
                     || ||||||.||||||||||||.||.||..|||||||.||.|| ||| ||
BPUM_3684___y     32 GACGAAGCAGAAAAGGATATTTCCTGTCTGGTCTGATCGGTGT-ATTGGT     80

BSNT_06195___     99 CGGTGCCGTATTAATGG----CGTTTATCATGCCGTACCTTTCAAATGAA    144
                     .||.||..|.|||||||    |.|||    |.||.||..|.|||      
BPUM_3684___y     81 AGGAGCTTTTTTAATGGGATTCTTTT----TCCCCTATGTATCA------    120

BSNT_06195___    145 GGGCTGGATACAGGCG------CCTTAGATCAGCAGCAAAACAACAATGG    188
                          |||.| |.|||      ||||.|....||||||.|||....||||
BPUM_3684___y    121 -----GGACA-AAGCGGCAGTCCCTTTGGGTGGCAGCAGAACGGAGATGG    164

BSNT_06195___    189 CCGGGAATCAATCAG-----------GACGGTGAATGTCAGTGTCAACAA    227
                     .|..|.|.||  |||           |||.||.|||||.|.||||||..|
BPUM_3684___y    165 GCAAGCAGCA--CAGGGCCCTTTAAAGACCGTCAATGTGAATGTCAATGA    212

BSNT_06195___    228 TGCCGTCACCAAGATTGTCAGC-AATGTGTCGCCCGCCGTTGTCGGTGTT    276
                     |||.|||||.||..|.|| |.| |||.||||.....|.||||||||.|||
BPUM_3684___y    213 TGCGGTCACAAAAGTCGT-ATCGAATATGTCAGATACGGTTGTCGGCGTT    261

BSNT_06195___    277 GTGAACATCCAAAAATC-AGATATTTGGGGAGAGAGCGGCGAGGCTGGGA    325
                     .|.||.||||||||.|| ||.| ||||||.|||..||||.|||||.||.|
BPUM_3684___y    262 ATTAATATCCAAAAGTCGAGCT-TTTGGGAAGAAGGCGGAGAGGCAGGCA    310

BSNT_06195___    326 GCGGCTCTGGCGTCATCTATAAGAAAAA---TGACAACTCCGCTTATGTC    372
                     ||||.||.||.||.||.|||||||||||   |||||   ||..||||.|.
BPUM_3684___y    311 GCGGGTCAGGTGTGATTTATAAGAAAAAGGGTGACA---CCTTTTATATT    357

BSNT_06195___    373 GTGACCAACCATCATGTCATCGAAGGCGCTTCCCAAATTGAAATCAGCTT    422
                     |||||||||||||||||||||.||||.||           .||.||||||
BPUM_3684___y    358 GTGACCAACCATCATGTCATCAAAGGTGC-----------CAACCAGCTT    396

BSNT_06195___    423 GAA---AGACGGTTCACG-TGTATCA---------GCTGATCTTGTCGGC    459
                     |||   ||.|  ||||.| ||...||         ||..||||||||||.
BPUM_3684___y    397 GAAGTGAGTC--TTCAGGATGGGACAAGGATTGGTGCCAATCTTGTCGGA    444

BSNT_06195___    460 AGCGACCAGCTGATGGACCTTGCCGTT-TTACGGGTGAAAAGCGATAAAA    508
                     |||||.|||||.|||||..|.||.||| |.|| .||.|||||.|||||.|
BPUM_3684___y    445 AGCGATCAGCTCATGGATTTAGCGGTTCTCAC-CGTCAAAAGTGATAAGA    493

BSNT_06195___    509 TTAAAGC-AGTCGCCGATTTCGGAAATTCAGATAAAGTGAAGTCTGGCGA    557
                      |.|||| |..|||.|..|||||.||||||||..|.||||||.|.||.||
BPUM_3684___y    494 -TCAAGCAAACCGCAGCCTTCGGTAATTCAGACCATGTGAAGCCCGGTGA    542

BSNT_06195___    558 GCCGGTTATTGCGATCGGGAACCCGTTAGGCCTTGAGTTTGCAGGCTCTG    607
                     |||.||.||.||.||.||.||.||.|||||.|||||.||.||||||||||
BPUM_3684___y    543 GCCTGTAATCGCCATTGGAAATCCATTAGGGCTTGAATTCGCAGGCTCTG    592

BSNT_06195___    608 TCACACAAGGCGTCATCTCAGGTACGGAGAGGGCGATCCCAGTGGATTCA    657
                     ||||||||||.|||||.|||||.|||||..|.|||||.||.|||||.||.
BPUM_3684___y    593 TCACACAAGGTGTCATTTCAGGAACGGAACGTGCGATTCCTGTGGACTCG    642

BSNT_06195___    658 AACGGTGATGGACAGCCTGACTGGAATGCAGAAGTCCTGCAAACAGATGC    707
                     ||.||.||.||||||.|.||.||||||||.||.||.||||||||||||||
BPUM_3684___y    643 AATGGAGACGGACAGGCGGATTGGAATGCGGAGGTACTGCAAACAGATGC    692

BSNT_06195___    708 GGCCATTAACCCTGGGAACAGCGGCGGCGCTTTGTTAAATATGGATGGGA    757
                     .|||||.||.||.|||||||||||.||.||..||.|.||||||||.||.|
BPUM_3684___y    693 CGCCATCAATCCAGGGAACAGCGGTGGTGCCCTGATCAATATGGACGGAA    742

BSNT_06195___    758 AGGTCATTGGCATCAATTCAATGAAAATTGCCGAGTCGGCGGTTGAAGGG    807
                     |.||.||.||.||.||.||||||||.||||||||.||.|..||.|||||.
BPUM_3684___y    743 AAGTGATCGGTATTAACTCAATGAAGATTGCCGAATCAGAAGTAGAAGGC    792

BSNT_06195___    808 ATTGGCCTGTCGATTCCATCTAAGCTCGTGATCCCTGTGATAGAGGATTT    857
                     ||.||.|||||.||.|||.|.||.|||||.||||||||.|||||||||||
BPUM_3684___y    793 ATCGGACTGTCTATCCCAGCGAATCTCGTCATCCCTGTCATAGAGGATTT    842

BSNT_06195___    858 AGAGAGATACGGAAAGGTCAAACGCCCGTTCCTTGGCATTGAGATGAAAT    907
                     ||||.|.||||||.||||.|||||.||||.|||.||..|||..|||||||
BPUM_3684___y    843 AGAGCGCTACGGAGAGGTGAAACGTCCGTACCTAGGTGTTGGCATGAAAT    892

BSNT_06195___    908 CCCTAAGC-GACATCGCAAGCTATCATTGGGATGAAACATTAAAGCTTCC    956
                      |.|.||| ||.||.||.|||||.||.||||||||||||||.|||||.||
BPUM_3684___y    893 -CATTAGCAGATATTGCGAGCTACCACTGGGATGAAACATTGAAGCTGCC    941

BSNT_06195___    957 TAAGAACGTCACCAAT--GGAGTGGTTGTGATGGGTGTAGACGCCTTT-T   1003
                     ....||||||||  ||  ||.||.||.||||||.||||.|| |||||| |
BPUM_3684___y    942 ATCTAACGTCAC--ATCAGGCGTTGTCGTGATGAGTGTCGA-GCCTTTGT    988

BSNT_06195___   1004 CACCTGCCGGAAAAGCAGGGCTGAAGGAACTGGATGTCATCACGGAATTT   1053
                     |.||.||.||||||||.|||||.||.||.|||||||||.||||....|||
BPUM_3684___y    989 CTCCGGCAGGAAAAGCGGGGCTAAAAGAGCTGGATGTCGTCACTTCCTTT   1038

BSNT_06195___   1054 GACGGATACAAAGTAAATGATATTGTTGACCTGCGAAAACGGCTT--TAT   1101
                     ||.||..|.|..|||.|..||||.||.|||||.||.||  |..||  |||
BPUM_3684___y   1039 GATGGCAAGAGTGTACAGAATATCGTAGACCTTCGTAA--GTATTTATAT   1086

BSNT_06195___   1102 CAGAAAAAAGTCGGTGACCGGGTGAAGGTGAAGTTTTACCGCGGCGGAAA   1151
                     ||.||.||||||||.|||..|||.|||||..||||||||||..|||||||
BPUM_3684___y   1087 CAAAAGAAAGTCGGCGACAAGGTAAAGGTACAGTTTTACCGAAGCGGAAA   1136

BSNT_06195___   1152 AGAAAAATCTGTAGACATCAAGCTGTCCTC-CGCAGACCAATTAGGCAGT   1200
                     ..|||||||.|||||.|||||.|| |.||| ..|.||||.|||.|||.|.
BPUM_3684___y   1137 GAAAAAATCAGTAGAAATCAAACT-TTCTCAAACCGACCGATTCGGCGGA   1185

BSNT_06195___   1201 TAA   1203
                     |.|
BPUM_3684___y   1186 TGA   1188


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