Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06199 and BPUM_3688
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_06199___yycG.1.24716.seq
# -bsequence dna-align/BPUM_3688___yycG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06199___yycG-BPUM_3688___yycG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06199___yycG-BPUM_3688___yycG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06199___yycG
# 2: BPUM_3688___yycG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1886
# Identity: 1393/1886 (73.9%)
# Similarity: 1393/1886 (73.9%)
# Gaps: 97/1886 ( 5.1%)
# Score: 4933.5
#
#
#=======================================
BSNT_06199___ 1 ATGAATAAGGTTGGTTTTTTTCGGTCGATCCAATTTAAGATT-ACCTTGA 49
||||.|||.||.|||||||||||.|||||.||.||||| ||| |||||.|
BPUM_3688___y 1 ATGAGTAAAGTAGGTTTTTTTCGCTCGATTCACTTTAA-ATTGACCTTAA 49
BSNT_06199___ 50 TTTATGTGCTTTTGATTATCATTGCCATGCAAATCATTGGTGTGTATTTT 99
||||.|||||..||||.|||.|.||||||||.||||||||.|||||.|||
BPUM_3688___y 50 TTTACGTGCTGCTGATCATCGTCGCCATGCAGATCATTGGCGTGTACTTT 99
BSNT_06199___ 100 GTCAATCAGGTAGAGAAGTCGCTGATCAGCTCTTATGAACAATCGTTGAA 149
||.||.|||.|||||.||||..|.||.|..||.|||||..|.||.|||||
BPUM_3688___y 100 GTGAAGCAGCTAGAGCAGTCCTTAATTAATTCATATGATAATTCCTTGAA 149
BSNT_06199___ 150 TCAGCGAATCGACAACCTT-TCTTATTATATCGAACAAGA---ATATAAG 195
||||||||||.|| .|.|| ||.|||||..|.|||||||| ||..||.
BPUM_3688___y 150 TCAGCGAATCTAC-TCGTTATCGTATTACCTAGAACAAGATTCATCGAAA 198
BSNT_06199___ 196 AGCGATAACGACAGTACCGTCATAAAGGATGACG-TCAGCCGTATTTTGA 244
|| ||| |.|||.| .||||.||.||.| |||...| ||.||.|
BPUM_3688___y 199 AG---TAA-GGCAGAA-----TTAAAAGAGGATGCTCAAAAG-ATATTAA 238
BSNT_06199___ 245 ATGACTTCACGAAAAGTGATGAGGTTCGGGAAATT---------AGCTTT 285
|.|||||.|..||.|..||||||..|...|||||| ||||.|
BPUM_3688___y 239 ACGACTTTAATAACAAAGATGAGTCTAATGAAATTTCTGAAGTCAGCTAT 288
BSNT_06199___ 286 GTAGATAAAAGCTATGAAGTGGTCGGTTCT-TCAAAGCCGTA----CGGT 330
.|.||..|||||...||.|||.|.|..||| |.|| || |.||
BPUM_3688___y 289 ATTGACGAAAGCAGAGAGGTGATTGCCTCTGTGAA-----TAACGGCAGT 333
BSNT_06199___ 331 GAGGAAGTGGCTGGGAAACAAACGACCGATCTGATTTTCAAAAGAATTTT 380
.||||..|.||.||.||..|||..||.||||.|||..|.|...|||||||
BPUM_3688___y 334 CAGGAGATTGCCGGCAAGAAAATCACAGATCAGATCATTAGCCGAATTTT 383
BSNT_06199___ 381 TTC--TA-CCAAACAGTCGTATTTAAGAAAATATTATGACCCGAAAAGCA 427
..| || .||||.| .|||..||..||||..||||||||..||..||
BPUM_3688___y 384 CGCAGTAGGCAAAGA---CTATGAAAAGAAATTCTATGACCCAGAATCCA 430
BSNT_06199___ 428 A-AATCAGAGTTCTTATTTCCGCGA-AGCCCGTCATGACTGAAAATCAAG 475
| ||.| |.||.|.||||||.|||| || ||||.|..|.||||||.||||
BPUM_3688___y 431 ATAAAC-GGGTGCGTATTTCTGCGACAG-CCGTGAAAAATGAAAACCAAG 478
BSNT_06199___ 476 AGGTTGTGGGCGCGATCTATGTTGTCGCGAGT-----ATGGAAGA-TGTC 519
|...|||.||.|.|||.|||||||| || |||| ||| .||.
BPUM_3688___y 479 AAACTGTCGGTGTGATTTATGTTGT-----GTCTTCGATGG-AGAGCGTG 522
BSNT_06199___ 520 TTTAATCAAATGAAGACGATCAACACGATACTGGCGTCCGG--CACAGGT 567
|||||.||||||...||.||.|||||.||..|||||.|.|| |||.|.|
BPUM_3688___y 523 TTTAACCAAATGCGAACCATTAACACCATTTTGGCGACGGGTACACTGAT 572
BSNT_06199___ 568 -----TTGGCACTTGTTTTGACGGCTCTTCTTGGTATTTT--TCTGGCAA 610
||||.|| |||.||.||.|||||.||||| ||| ..|
BPUM_3688___y 573 CGCCCTTGGGAC-------GACCGCACTACTTGGGATTTTCATCT--TTA 613
BSNT_06199___ 611 GAACCATTACCCACCCACTTTCAGATATGCGAAAGCAGGCGATGGAGCTT 660
|||||||.||.||.||..|.||.||||||.|||||||.||.||.|||||.
BPUM_3688___y 614 GAACCATCACTCATCCTATATCGGATATGAGAAAGCAAGCAATTGAGCTC 663
BSNT_06199___ 661 GCGAAAGGGAATTTCTCGAGGAAGGTTAAAAAGTACGGGCATGATGAAAT 710
||.||||||||.||.||.|||||||||..||||||.||.|||||.||.||
BPUM_3688___y 664 GCCAAAGGGAACTTTTCCAGGAAGGTTCGAAAGTATGGACATGACGAGAT 713
BSNT_06199___ 711 TGGGCAGCTGGCCACAACGTTTAACCACTTAACGAGAGAGCTTGAAGATG 760
|||.|||||.||.|||||.||||||||..|.|||||||||||.||.||.|
BPUM_3688___y 714 TGGCCAGCTTGCGACAACCTTTAACCATCTGACGAGAGAGCTGGAGGAAG 763
BSNT_06199___ 761 CCCAGGCGATGACTGAAGGAGAACGCAGAAAGCTAGCCTCTGTCATTGCT 810
|.|||...|||||.||.|||||.||.|..||||||.|.|||||||||||.
BPUM_3688___y 764 CGCAGCTCATGACAGAGGGAGAGCGGAAGAAGCTATCTTCTGTCATTGCC 813
BSNT_06199___ 811 TATATGACAGACGGCGTTATCGCCACAAACCGAAACGGAGCGATTATTCT 860
|||||||||||.|||||.||||||||.||.|.||||||.|||||||||||
BPUM_3688___y 814 TATATGACAGATGGCGTCATCGCCACGAATCAAAACGGTGCGATTATTCT 863
BSNT_06199___ 861 CTTAAACAGCCCGGCGCTGGAACTGTTGAACGTTTCACGTGAAACAGCCT 910
.|||||||||||.||..|.||.|||||.||.|||||||||||||||||..
BPUM_3688___y 864 ATTAAACAGCCCAGCATTAGAGCTGTTAAATGTTTCACGTGAAACAGCAC 913
BSNT_06199___ 911 TAGAAATGCCGATTACGAGTTTGCTGGGGCTTCAAGAGAATTATACTTTT 960
||||.||||||||||||...||.|||||.||..|.||.|...||||.|||
BPUM_3688___y 914 TAGAGATGCCGATTACGTCCTTACTGGGCCTCGAGGACACGCATACCTTT 963
BSNT_06199___ 961 GAAGATTTAGTGGAGCAGCAGGATTCTATGCTGCTTGAAATTGAGCGCGA 1010
|||||||||||.||..|.||.|||||.||||||||.|||||.||.|||||
BPUM_3688___y 964 GAAGATTTAGTCGAAAATCAAGATTCCATGCTGCTAGAAATAGAACGCGA 1013
BSNT_06199___ 1011 TGATGAATTAACGGTGCTTCGCGTGAATTTCTCTGTGATTCAAAGGGAAC 1060
.|||.|..|..|.||..|.||.|||||||||||.||||||||.|..||.|
BPUM_3688___y 1014 AGATCAGCTGTCAGTTTTGCGTGTGAATTTCTCAGTGATTCAGAAAGAGC 1063
BSNT_06199___ 1061 ACGGCAAAATTGATGGTTTAATCGCTGTCATTTACGATGTAACCGAACAA 1110
||||.|||||||||||.|||||.||.|||||||||||.||.||.||.||.
BPUM_3688___y 1064 ACGGGAAAATTGATGGATTAATTGCAGTCATTTACGACGTCACGGAGCAG 1113
BSNT_06199___ 1111 GAGAAAATGGAT-CAGGAACGCAGAGAATTCGTTGCGAATGTATCACATG 1159
||||||||.||| || ||||||.|.||||||||||||||.|||||.||||
BPUM_3688___y 1114 GAGAAAATTGATGCA-GAACGCCGCGAATTCGTTGCGAACGTATCGCATG 1162
BSNT_06199___ 1160 AGCTGCGGACGCCGCTTACGACAATGCGCAGCTATTTAGAAGCGTTAGCC 1209
||||.||.||.|||||.|||||.|||||.||||||.|.||.|||.|.||.
BPUM_3688___y 1163 AGCTACGCACACCGCTAACGACGATGCGAAGCTATCTTGAGGCGCTGGCT 1212
BSNT_06199___ 1210 GAAGGCGC--GTGGGAAAATAAAGACATTGCTCCGCGCTT-CTTAATGGT 1256
|||||||| .||| |.|||||||..||||.||..|.|| ||||.| ||
BPUM_3688___y 1213 GAAGGCGCAATTGG--AGATAAAGAGCTTGCACCAAGGTTCCTTAGT-GT 1259
BSNT_06199___ 1257 GACGCAAAATGAAACAGAGCGTATGATCCGACTTGTCAATGATCTGCTTC 1306
||||||||||||||||||.||.||||||||.|||||||||||..||||.|
BPUM_3688___y 1260 GACGCAAAATGAAACAGAACGCATGATCCGGCTTGTCAATGACTTGCTAC 1309
BSNT_06199___ 1307 AGCTGTCGAAATTTGACAGTAAGGATTACCAATTTAACCGGGAATGG--- 1353
||||.||.||.||.|||||.||||||||.|||||.|||||.||.|||
BPUM_3688___y 1310 AGCTATCTAAGTTCGACAGCAAGGATTATCAATTCAACCGTGAGTGGACG 1359
BSNT_06199___ 1354 -ATTCAGATTGTCCGGTTTATGTCACTTATTATTGACCGTTTTGAAATGA 1402
||| ||.||.|.|||||.|||.|..|.||.||.|||||||||||||
BPUM_3688___y 1360 AATT----TTATCAGATTTATCTCATTGGTCATCGATCGTTTTGAAATGA 1405
BSNT_06199___ 1403 CAAAAGAGCAGCATGTGGAGTTTATCCGCAATCTGCCGGACAGAGATCTG 1452
||||||||||||||||.|||||||||||||||||.|||.|..|.||..|.
BPUM_3688___y 1406 CAAAAGAGCAGCATGTTGAGTTTATCCGCAATCTTCCGCAGCGTGAAATA 1455
BSNT_06199___ 1453 TATGTCGAGATTGACCAGGACAAAATAACGCAGGTGCTCGATAATATTAT 1502
|||||.||.||.||.||.||.|||||.||.||.||||||||||||||.||
BPUM_3688___y 1456 TATGTGGAAATCGATCAAGATAAAATCACACAAGTGCTCGATAATATCAT 1505
BSNT_06199___ 1503 TTCTAATGCTTTAAAATATTCACCGGAAGGCGGACATGTCACGTTCTCTA 1552
|||||||||..|.|||||.||.||.||.||.||||||.|||||||..|..
BPUM_3688___y 1506 TTCTAATGCGATGAAATACTCTCCAGAGGGTGGACATATCACGTTTACCG 1555
BSNT_06199___ 1553 TTGATGTCAATGAAGAGGAAGA-ACTTCTCTATA-TCAGCGTGAAGGATG 1600
|||||.|..||||.|| ||||| .|||.|.| || |||||||.||.||||
BPUM_3688___y 1556 TTGATTTGGATGAGGA-GAAGAGTCTTGTAT-TATTCAGCGTCAAAGATG 1603
BSNT_06199___ 1601 AAGGGATCGGCATTCCAAAAAAAGATGTCGAAAAAGTCTTTGACCGCTTC 1650
||||.|||||.|||||.||.||.|||.|.||.|||.|||||||.||.||.
BPUM_3688___y 1604 AAGGAATCGGTATTCCGAAGAAGGATATGGATAAAATCTTTGAACGTTTT 1653
BSNT_06199___ 1651 TACAGGGTGGATAAAGCGAGAACGAGAAAGCTTGGCGGCACTGGTCTGGG 1700
||..|.||||||||.||||||||.||||||||||||||.||.||.||.||
BPUM_3688___y 1654 TATCGAGTGGATAAGGCGAGAACAAGAAAGCTTGGCGGAACCGGCCTTGG 1703
BSNT_06199___ 1701 ATTGGCGATTGCCAAGGAAATGGTACAGGCGCACGGTGGAGATATTTGGG 1750
..|.||||||||.||.||||||||.|||||.||.||.|||||.|||||||
BPUM_3688___y 1704 CCTTGCGATTGCAAAAGAAATGGTTCAGGCTCATGGCGGAGACATTTGGG 1753
BSNT_06199___ 1751 CGGACAGCATAGAAGGAAAAGGCACGACGATAACATTTACTCTTCCATAT 1800
|.||||||||.|||||||||||.||.||..|.||.|||||.|||||.||.
BPUM_3688___y 1754 CTGACAGCATTGAAGGAAAAGGAACCACAGTGACCTTTACCCTTCCGTAC 1803
BSNT_06199___ 1801 AAAGAGGAACAAGAGGATGATTGGGATGAAGCGTGA 1836
||.||.||||||||||||||||||||||||||||||
BPUM_3688___y 1804 AATGAAGAACAAGAGGATGATTGGGATGAAGCGTGA 1839
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