Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02070 and BPUM_3695

See Amino acid alignment / Visit BSNT_02070 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence dna-align/BSNT_02070___yjiB.1.24716.seq
#    -bsequence dna-align/BPUM_3695.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02070___yjiB-BPUM_3695.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02070___yjiB-BPUM_3695.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02070___yjiB
# 2: BPUM_3695
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1314
# Identity:     788/1314 (60.0%)
# Similarity:   788/1314 (60.0%)
# Gaps:         231/1314 (17.6%)
# Score: 2162.0
# 
#
#=======================================

BSNT_02070___      1 ATGAATGTGTTAAAC--CGCCGGCAA--GCCTTGCAGCGAGCGCTGCTCA     46
                         |||   .||||  ||.|..|||  |||.||||...|.||.|..|.|
BPUM_3695          1 ----ATG---GAAACAACGTCCCCAAGTGCCGTGCAAAAAACGTTATTAA     43

BSNT_02070___     47 ATGGGAAAAACAAACAGGATGCGTATCATCCGTTTCCATGGTATG--AAT     94
                     ..||.||||||||.|||||..|||||||.||.|||...|||||||  || 
BPUM_3695         44 GAGGAAAAAACAAGCAGGACCCGTATCACCCATTTGATTGGTATGCCAA-     92

BSNT_02070___     95 CGATGAGAAAG-GATGCGCCTGTTTCCTTTGATGAAGAAAACCAAGTGTG    143
                      .|||.|.||| .|| |.||||||...|||||.||||..|.||.|..|||
BPUM_3695         93 -CATGCGCAAGACAT-CACCTGTTCATTTTGACGAAGCCAGCCGAACGTG    140

BSNT_02070___    144 GAGCGTTTTTCTTTATGATGATGTCAAAAAAGTTGTTGGG----------    183
                     |||.||.||....||.||.||.| |||           ||          
BPUM_3695        141 GAGTGTATTCACCTACGAGGAAG-CAA-----------GGCGCGTGACAA    178

BSNT_02070___    184 --GATAAAGAGTTGTTTTCCAGTTGCATGCCGCAGC-------AGACAAG    224
                       ||||||||....|||||.|||         ||||       |.||.||
BPUM_3695        179 TCGATAAAGATACCTTTTCGAGT---------CAGCCTCCTAAAAACCAG    219

BSNT_02070___    225 CTCTATTGGAA--ATTCCATCATTAA------------CATGGACCCGCC    260
                     |      ||||  ||||..|.||.||            .||||||||.||
BPUM_3695        220 C------GGAAGCATTCACTGATGAAAACAATGGTGATGATGGACCCTCC    263

BSNT_02070___    261 GAAGCATACAAAAATCCGTTCAGTCGTGAACAAAGCCTTTACTCCGCGCG    310
                     .||.||.||....|||||.||..|.||.|.||||||||||||.||.||.|
BPUM_3695        264 CAATCACACTCGCATCCGCTCCATTGTCAGCAAAGCCTTTACCCCTCGAG    313

BSNT_02070___    311 TGATGAAGCAATGGGAACCGAGAATTCAAGAAATCACAGATGAACTGAT-    359
                     |.|||||....|||||.||..|.|||||.|||.|.|..||||||||||| 
BPUM_3695        314 TCATGAAATTGTGGGAGCCTCGTATTCATGAATTAATGGATGAACTGATG    363

BSNT_02070___    360 TCAAAAATGTCAGGGGCGCAGTGAGTTTGACCTTGTTCACGATTTTTCAT    409
                     .||.||.| |.|.||....|..|||.|||||||.||.||.||..||||.|
BPUM_3695        364 GCACAACT-TGAAGGAAAAAAAGAGATTGACCTAGTGCAAGACATTTCCT    412

BSNT_02070___    410 ACCCGCTTCCGGTTATTGTGATATCTGAGCTGCTGGGAGTGCCTTCAGCG    459
                     |.||||||||.||.|||||.||..|.|||||..|.||.|||||.||||.|
BPUM_3695        413 ATCCGCTTCCTGTCATTGTCATTGCAGAGCTTTTAGGTGTGCCCTCAGAG    462

BSNT_02070___    460 CATATGGAACA---GTTTAAAGCATGGTCTGATCTTCTGGTCAGTACACC    506
                     ||||   ||||   .|||||||.||||||.|||.||||.|||||.|..||
BPUM_3695        463 CATA---AACAATCTTTTAAAGAATGGTCAGATATTCTCGTCAGCATGCC    509

BSNT_02070___    507 GAAGGATAAAAGTGAA------------GAAGCTGAAAAAGCCTTTTTGG    544
                           ||||||||||            |.|||||||          |||
BPUM_3695        510 ------TAAAAGTGAAAGTGAGAAGGATGTAGCTGAA----------TGG    543

BSNT_02070___    545 AAGA----ACGAGATAAGTGTGAGGAAGAACTGGC-----CGCGTTTTTT    585
                     .|||    |||.||.||   .|.|||||  |||.|     .||.||||||
BPUM_3695        544 CAGAAAACACGTGACAA---AGGGGAAG--CTGACATGATGGCATTTTTT    588

BSNT_02070___    586 GCCGGCATCATAGAAGAAAAGCGAAACAAACCGGAACAGGATATTATTTC    635
                     ||.|.||.|||.|||.|.||.||..||||.|..|...|.|||.|.|||||
BPUM_3695        589 GCAGACACCATTGAAAAGAAACGTCACAACCTTGGTGATGATTTAATTTC    638

BSNT_02070___    636 TATTTTAGTGGAAGCGGAAGAAACAGGCGAGAAGCTGTCCGGTGAAGAGC    685
                     ..|..|..|..|||||||.||.|..||.||.||.|||||.|..||.||.|
BPUM_3695        639 CCTCATCATTCAAGCGGAGGAGAATGGAGACAAACTGTCAGCAGATGAAC    688

BSNT_02070___    686 TGATTCCGTTTTGCACGCTGCTGCTGGTGGCCGGAAATGAAACCACTACA    735
                     |.|||||.|||||.|..||.||.||..|.|||||.||.|||||.||.||.
BPUM_3695        689 TCATTCCATTTTGTAATCTTCTTCTTTTAGCCGGCAACGAAACAACCACC    738

BSNT_02070___    736 AACCTGATTTCAAATGCGATGTACAGCATATTAGAAACGCCAGGCGTTTA    785
                     |||.||||.||.|||..|||||.||||.|.||||||..|||.||.|..||
BPUM_3695        739 AACTTGATCTCCAATATGATGTTCAGCTTGTTAGAACAGCCTGGTGCGTA    788

BSNT_02070___    786 CGAGGAACTGCGCAGCCA---TCCTGAACTGATGCCTCAGGCAGTGGAGG    832
                     .||.|..|| |||  |||   |||||||||.||.||.|..||.|||||.|
BPUM_3695        789 TGAAGCGCT-CGC--CCAATCTCCTGAACTCATCCCACGTGCGGTGGAAG    835

BSNT_02070___    833 AAGCCTTGCGTTTCAGAGCGCCGGCCCCGGTTTTGAGGCGCATTG-----    877
                     |.||..|.|||||..|.||.||.||.||        .||| ||||     
BPUM_3695        836 AGGCTGTCCGTTTTCGTGCACCAGCTCC--------TGCG-ATTGTTCGT    876

BSNT_02070___    878 -------CCAAGCGGGATACGGAGATCGGGGGGCACCTGATTAAAGAAGG    920
                            |.||   .|||||.||..|.||.|.|.|..||.|.||  ||||
BPUM_3695        877 TATGTCACAAA---AGATACAGAACTTGGAGAGAAAGTGTTGAA--AAGG    921

BSNT_02070___    921 TG-----ATATGGTTTTGGCGTTTGTGGCATCGGCAAATCGTGATGAAGC    965
                     .|     ||.||.||   |.||||.|.||.||.||.||.||.|||| |||
BPUM_3695        922 GGCGACAATGTGATT---GTGTTTCTTGCTTCCGCCAACCGAGATG-AGC    967

BSNT_02070___    966 G--AAGTTTGACAGGCCGCACATG--TTTGATATCCGCCGCCATCCCAAT   1011
                     |  ||.|||.|.|   ||||||||  |..|||||.|.|||||||||.|||
BPUM_3695        968 GTCAATTTTCAAA---CGCACATGAATACGATATACACCGCCATCCTAAT   1014

BSNT_02070___   1012 CCGCATATTGCGTTT-GGCCACGGCATCCATTTTTGCCTTGGGGCCCCGC   1060
                     ||.||||||| |||| ||.|||||.||||||||.||||||||.||.||.|
BPUM_3695       1015 CCTCATATTG-GTTTCGGGCACGGTATCCATTTCTGCCTTGGCGCACCAC   1063

BSNT_02070___   1061 TTGCCCGTCTTGAAGCAAATATCGCGTTAACGTCTTT--------GATTT   1102
                     |.||.||||||||||||..||..||..|||.|..|||        |||.|
BPUM_3695       1064 TAGCACGTCTTGAAGCATGTACAGCTATAAAGATTTTCATAGAACGATAT   1113

BSNT_02070___   1103 ------------CTGCTTTTCCTCATATGGAGTGCGTCAGTATCACTCCG   1140
                                 ||.|||    ||.||||                .||||
BPUM_3695       1114 GAGGCGCTAGAGCTCCTT----TCTTATG----------------TTCCG   1143

BSNT_02070___   1141 ATTGA-AAACAGTGTGATATACGGA-TTAAAGAGCT-----TCCGTGTGA   1183
                     | ||| ||.|||....||.||.||| |.||||||||     |.|||||.|
BPUM_3695       1144 A-TGACAAGCAGCAGCATGTATGGACTGAAAGAGCTGAAACTGCGTGTCA   1192

BSNT_02070___   1184 AA------ATATAA   1191
                     .|      ..||||
BPUM_3695       1193 CACCTCGTTCATAA   1206


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