Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00365 and BPUM_3698

See Amino acid alignment / Visit BSNT_00365 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:16
# Commandline: needle
#    -asequence dna-align/BSNT_00365___ybdO.1.24716.seq
#    -bsequence dna-align/BPUM_3698___ybdO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00365___ybdO-BPUM_3698___ybdO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00365___ybdO-BPUM_3698___ybdO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00365___ybdO
# 2: BPUM_3698___ybdO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1339
# Identity:     623/1339 (46.5%)
# Similarity:   623/1339 (46.5%)
# Gaps:         527/1339 (39.4%)
# Score: 1294.0
# 
#
#=======================================

BSNT_00365___      1 ATGCGTCTGAATCGGCAATTTATCCGCACTCAGCTGATGGCACAGAACAT     50
                                                                       
BPUM_3698___y      0 --------------------------------------------------      0

BSNT_00365___     51 ATTGAGCAAGAATGCGCCTGCCAAACGGGAGAATGCGACTGAAAATCCAG    100
                                                                       
BPUM_3698___y      0 --------------------------------------------------      0

BSNT_00365___    101 CGGCAGTTCTGGAAAAGGCATACAGCAGGCTTAAGTCACAATCTTCAACT    150
                                                                       
BPUM_3698___y      0 --------------------------------------------------      0

BSNT_00365___    151 GGGGGAATCAATCAGTTCAATTATTCTAAAACCAGCGTGTCGGGAAACAG    200
                           ||.||          |||  |||.||      ||| |.|.||||
BPUM_3698___y      1 ------ATGAA----------TAT--TAATAC------GTC-GTACACAG     25

BSNT_00365___    201 C-GGGGCGTTCAGCAAAGTGTATCAATCAG---CGAATGATCGAACAGTG    246
                     | ||.|| ||||         |.|||||||   |||||            
BPUM_3698___y     26 CAGGTGC-TTCA---------AACAATCAGAACCGAAT------------     53

BSNT_00365___    247 ACAGAC-ACAGGGGAAG---AAACAGTGATTCAATCCCAAAACCAC-TAT    291
                       |||| |.|    |||   ||.|||..|||       ||||..|| .||
BPUM_3698___y     54 --AGACTATA----AAGGTCAATCAGCTATT-------AAAAGTACAAAT     90

BSNT_00365___    292 GA----AT--CTGAGAG-TGATATCAGAATCAAAATACTAGATGAAAAAT    334
                     ||    ||  |.|| || |||||...||||.||||||.||||||||||||
BPUM_3698___y     91 GAGGTGATGACCGA-AGCTGATAGACGAATGAAAATATTAGATGAAAAAT    139

BSNT_00365___    335 ACAGCAGGATGAATGCGATTAAT----AAAACAAAGTCTGA-TCCATTAG    379
                     ||     ||..||    ||||||    ||||.|||   .|| ||||  ||
BPUM_3698___y    140 AC-----GAAAAA----ATTAATGAACAAAATAAA---CGATTCCA--AG    175

BSNT_00365___    380 GC-----------TATATTAAGGATAAGTACCAAAATTCAAAGTCTCCTT    418
                     .|           ||||||  .||||||||.|.||||.||.|.||.||||
BPUM_3698___y    176 ACCCTCATGGTCATATATT--TGATAAGTATCGAAATCCACATTCCCCTT    223

BSNT_00365___    419 ATTTCAGAAGTGATCTGTC--AGCTGCAGAAAGACAGGCCGCTTACGATA    466
                     |||..||||.||||.|..|  |.|  ||||||||.|.||.||||||..||
BPUM_3698___y    224 ATTATAGAAATGATTTAACCAAAC--CAGAAAGAGAAGCTGCTTACTCTA    271

BSNT_00365___    467 ATGAAACAGAATGGTTATTCAAA----GGGA-AGGCGCAAAACTATAACC    511
                     ..|||    |.|||||...|.||    |||| ||| |....|.|||||..
BPUM_3698___y    272 TGGAA----ATTGGTTGGGCTAACCACGGGAGAGG-GGGGTATTATAATT    316

BSNT_00365___    512 TTCAGGATGCTGTGTTTCGGAATGTCACATTTCATGG-------------    548
                     ||.|.||.||..|.||.||.||.|..|     .|.||             
BPUM_3698___y    317 TTAATGACGCCATCTTCCGTAACGAAA-----AACGGTACGATCCTACCC    361

BSNT_00365___    549 --GGAAGTGGAAGCTGAGAATGAAAAGGTGTA-TCAGCGGGGAC---AGG    592
                       |.|||||.|    || ||.||||    .|| |||.|  .|||   |||
BPUM_3698___y    362 AAGAAAGTGTA----GA-AAAGAAA----TTATTCAAC--CGACAAAAGG    400

BSNT_00365___    593 TTAACCAGCAGCTGCAAGTACTGTT------GAATCG--AAACCATATTC    634
                     |.|||.|.||..|.||||...||||      .|||.|  .||||  ||||
BPUM_3698___y    401 TCAACGAACAATTACAAGATTTGTTCTCTAAAAATGGTATAACC--ATTC    448

BSNT_00365___    635 ATATTCCAGAGGGGACAGAGCTG------ACGTTTACAATC-ACACCGAT    677
                     .||    |.|    |||    ||      ||.|||||.||| || ||.|.
BPUM_3698___y    449 CTA----AAA----ACA----TGAATTTCACTTTTACCATCGAC-CCAAA    485

BSNT_00365___    678 TGACT----ATCAGGTGCGGGTAAGCGGGT----CAGACGATCAGGAT--    717
                     |.|.|    ||.||..|.||||     |||    ||||.||     ||  
BPUM_3698___y    486 TCATTTCAAATTAGTGGTGGGT-----GGTTCAACAGATGA-----ATCG    525

BSNT_00365___    718 CTGATCAAGCAAATTGAGCAAGTGCTGCAATCTGGAGACAA-CAGCAA--    764
                     ||||..||.|.|||.|   |||..||   || |..|.|||| ||.|||  
BPUM_3698___y    526 CTGACTAAACTAATAG---AAGACCT---AT-TAAATACAAGCAACAATA    568

BSNT_00365___    765 ----AGAACTATTTTTGCACATCATGAAAAG-CCAAAGCAGTGATTCAGC    809
                         ||||.|||||||.||.||.|||||||| ..|||..| ||||||..|
BPUM_3698___y    569 CAAGAGAATTATTTTTCCATATTATGAAAAGTAGAAATGA-TGATTCGAC    617

BSNT_00365___    810 ACAATTTTCCGAAGAGGCCT-ATCAAAAGTATCAGGCT--------GCTC    850
                     .|||||       .|.|||| ||      |.||..|||        .||.
BPUM_3698___y    618 TCAATT-------CACGCCTGAT------TCTCTTGCTAAATTCCACCTT    654

BSNT_00365___    851 GTGAGATGTATGAA---------GTTACAGGCTACCATTTGAAGGATTTA    891
                     ||||     ||.||         ||.|||||||||.||||.||.||.|||
BPUM_3698___y    655 GTGA-----ATCAAATCAAAACGGTGACAGGCTACAATTTAAAAGACTTA    699

BSNT_00365___    892 GAAGTGATTG---ATGGGCGGTACGTCACGCCTGA--GGGACGTGACTTA    936
                     .|   .||||   |.||.|..|..||.|||..|.|  |||.|...|.|| 
BPUM_3698___y    700 AA---TATTGTAAACGGTCAATTTGTAACGGATAAAGGGGTCAATATTT-    745

BSNT_00365___    937 ATGGATGTATATAAGGAAGAGCT--TGAAAAA--GATCCAGTGCAGAA--    980
                      |.|||.||||.||.|||||.||  |||||||  .||.||..||||||  
BPUM_3698___y    746 -TTGATATATACAAAGAAGATCTCCTGAAAAACCCATACACAGCAGAACA    794

BSNT_00365___    981 ---ACAAA---CGGCTTCTTAT-----------GCTAT---ATCTTACTA   1010
                        ||.||   |.|||||..||           |||||   ||||     
BPUM_3698___y    795 TGCACGAATTGCCGCTTCACATTACGGAGCACAGCTATTTGATCT-----    839

BSNT_00365___   1011 TCGTTCAGAGCTCAGTAAAATCGCGGAAGCCGGGTATAATGCCATTCCGG   1060
                             ||| ||  ||||          |||||.|.||.|.|||||.|
BPUM_3698___y    840 --------AGC-CA--AAAA----------CGGGTTTGATTCTATTCCCG    868

BSNT_00365___   1061 ATTTCATCCTTTCAATTGATTA-CAGCAATGGATCTCTGAGAGATG----   1105
                     ||||..|..|.||.||||.||| || .||.||.||   |..|.|||    
BPUM_3698___y    869 ATTTGGTGTTATCTATTGGTTATCA-AAACGGGTC---GTTACATGACAT    914

BSNT_00365___   1106 TGGGACAAAGCAAG--AGCTATGGGACCGGAGATACCGGGTGGCTTGAAG   1153
                     |||| ||||  |||  |..|||      ||||             |||||
BPUM_3698___y    915 TGGG-CAAA--AAGAAAATTAT------GGAG-------------TGAAG    942

BSNT_00365___   1154 CATTAAAGCG-------TCAAACGGGTGTGAATTATTAG   1185
                         |||.||       .||||.|   ||||        
BPUM_3698___y    943 ----AAAACGGTAGAGAACAAAAG---GTGA--------    966


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