Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00363 and BPUM_3699
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:16
# Commandline: needle
# -asequence dna-align/BSNT_00363___ybdN.1.24716.seq
# -bsequence dna-align/BPUM_3699___ybdN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00363___ybdN-BPUM_3699___ybdN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00363___ybdN-BPUM_3699___ybdN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00363___ybdN
# 2: BPUM_3699___ybdN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity: 562/953 (59.0%)
# Similarity: 562/953 (59.0%)
# Gaps: 190/953 (19.9%)
# Score: 1409.0
#
#
#=======================================
BSNT_00363___ 1 ATGGTGAAAAA----ATGGC------------TTATTCCATTCGCTGTT- 33
.|||.||| || | |||||.|.|.||.|.||
BPUM_3699___y 1 ---ATGACAAATACTAT--CTTCAAACGTTTTTTATTACCTGCGTTATTA 45
BSNT_00363___ 34 ---ATGC-TGT--CT-GTCTTATT-CACCTTTACGTATTCGGCATCAGCT 75
|||| ||| || ||.||.|| ||.|| .||||.|||..||
BPUM_3699___y 46 TTAATGCTTGTTACTAGTTTTTTTGCATCT-----AATTCAGCAGAAG-- 88
BSNT_00363___ 76 GCCGGAGTCACTGCTATCACAGGAAACAATTCATT--TGATACCGCAATG 123
|.||.|||||.||.||.|| ||.| |.|.||.|||| |
BPUM_3699___y 89 ----------CAGCGATCACGGGGAATAA--CAGTCCTAACACAGCAA-G 125
BSNT_00363___ 124 C-CGATCGGTTATTGGAAATATAAAAATATC-----GATACAACAA---T 164
| |.||.||.||||||||||||| .|| |||||.|||| |
BPUM_3699___y 126 CTCAATGGGATATTGGAAATATA-----GTCGTCCAGATACGACAATCTT 170
BSNT_00363___ 165 ACTGGAAGCTGGTCAAGATGAAGCCTATT-TCACTTTTACAGCT-AATAA 212
||..||| |||.||.|||||||.|||| ||| .||||| |.| |||||
BPUM_3699___y 171 ACCTGAA---GGTGAAAATGAAGCGTATTATCA-ATTTAC-GATCAATAA 215
BSNT_00363___ 213 GGGAGAAAAAGTATACGTGAGGAGTAC--ATACCAGAGCGCGTATACAGG 260
.||.||||.|||.||.||.||.|||.| |||..| ||| ..|||||.||
BPUM_3699___y 216 AGGTGAAAGAGTTTATGTCAGAAGTTCGTATAATA-AGC-AATATACTGG 263
BSNT_00363___ 261 GATGAAAATTGAAATTTAT-----GATAAGAATAGAATACCTGTTTCTCA 305
|||||||||.||..|.||| || ||||.| |||.|....|
BPUM_3699___y 264 GATGAAAATCGAGGTGTATAACTCGA----AATATA----CTGATGTAAA 305
BSNT_00363___ 306 AGGGACAGAAGTCATTAACCCTAATACGTTTTCTTCTTTTATTTATGCAA 355
| ||||||||.|||||.||..||.||.|..|..|.|||||||.|||||
BPUM_3699___y 306 A---ACAGAAGTGATTAATCCAGATTCGGTAACGCCCTTTATTTTTGCAA 352
BSNT_00363___ 356 A---TGCAGACGCCCAAAAC----ACGACGGATACCTTTTATGTGAAAGT 398
| ||..|||| ..|| ||..|.||.||.|.||.|||.|||||
BPUM_3699___y 353 ATACTGGTGACG----TTACTTCTACTTCAGAAACTTATTTTGTAAAAGT 398
BSNT_00363___ 399 GTCACGAGGCACCTATACCGGAAACATGTATTTTACACTTTCAATTGAAG 448
|.|.||.||.||.|||||.|||||.|||||||||||..|.||.|||.|||
BPUM_3699___y 399 GACCCGTGGTACATATACAGGAAATATGTATTTTACTGTCTCCATTCAAG 448
BSNT_00363___ 449 ACCGAATCAAATCAGGCAGCGGAACATTCCAATTCAGCGGCGCTGCTGAA 498
|.||.||||||||.||.|..|||||||||.|.||.|..||.||.||....
BPUM_3699___y 449 ATCGCATCAAATCTGGAAATGGAACATTCAATTTTACGGGAGCCGCCACC 498
BSNT_00363___ 499 AATAAAGGAAATAC-------AAGCCTTAGCCCCTCAGGTTCTGATTCCA 541
||.|..||.||||| ||...| |.|||...||||||..
BPUM_3699___y 499 AACATGGGGAATACTTCTTTGAATTTT-------TTAGGAGTTGATTCTT 541
BSNT_00363___ 542 GCGTGA--TCAAGGTTGATTTAACAAA-------CCAATCCGGGATACCG 582
..||.| |||| |.||||||||.|| .|.||||...|.|
BPUM_3699___y 542 CTGTCATTTCAA--TGGATTTAACGAAGAACTCTTCTATCCCTAAAA--- 586
BSNT_00363___ 583 CGTGATGCCATTGT---AACCAGAGTTCAGACAACCGCCACTCAAACACC 629
||||.||.|| |.|| |.|||| |||||....||.|||.|.||
BPUM_3699___y 587 ----ATGCAATCGTTAAATCC--ATTTCA-ACAACTAGTACCCAATCGCC 629
BSNT_00363___ 630 AAGCCAGGGAAAT---ACACGCCACCTGAT--CATGACGAGCGAAAAC-- 672
.|.|||.|||||| ||.|.|.|.||||| | ||| .|.||||
BPUM_3699___y 630 TAACCAAGGAAATGTCACTCACAAGCTGATGGC-TGA----TGCAAACAA 674
BSNT_00363___ 673 -------AACGAATGGCGCCGTGCTCTTGTAAACAGCTCGACTTCA---- 711
||||||| |..|||| .||..||.||
BPUM_3699___y 675 GATTTGGAACGAAT---------CCATTGT------TTCATCTGCAACAA 709
BSNT_00363___ 712 --GGGTCTTATGATATCTCTTTGTCAGATCAACTCAGTGTGGC---AAAG 756
||.|||||...|||.|||.||..|.|||||.|.|..||.|| |||
BPUM_3699___y 710 GTGGTTCTTACCGTATTTCTCTGGAAAATCAATTAAAAGTCGCTCAAAA- 758
BSNT_00363___ 757 GTATGGAGTTTTAAATATAATACATTAGCGACAGCCAGATCGACGATGAG 806
||||||.|||||.||.|||.||...||.|||||.|||||.||.|||||
BPUM_3699___y 759 --ATGGAGCTTTAAGTACAATGCAAAGGCTACAGCAAGATCTACTATGAG 806
BSNT_00363___ 807 CAACGTAAAAGCAAAAATAGATTATGAATACGACGTGACA-AAGCAGTTT 855
|||.||.|||||..|.||...|||.|||||.||.||.||| |.|.| ||.
BPUM_3699___y 807 CAATGTCAAAGCCGATATCCGTTACGAATATGATGTCACAGATGGA-TTC 855
BSNT_00363___ 856 TAA 858
|||
BPUM_3699___y 856 TAA 858
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