Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06222 and BPUM_3705

See Amino acid alignment / Visit BSNT_06222 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:41
# Commandline: needle
#    -asequence dna-align/BSNT_06222___rplI.1.24716.seq
#    -bsequence dna-align/BPUM_3705___rplI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06222___rplI-BPUM_3705___rplI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06222___rplI-BPUM_3705___rplI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06222___rplI
# 2: BPUM_3705___rplI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 458
# Identity:     338/458 (73.8%)
# Similarity:   338/458 (73.8%)
# Gaps:          16/458 ( 3.5%)
# Score: 1171.0
# 
#
#=======================================

BSNT_06222___      1 ATGAAGGTTAT-TTTCTTACAAGATGTAAAAGGAAAAGGAAAAAAAGGCG     49
                     |||||.||.|| |||| ||.||||.||||||||.|||||.||||||||||
BPUM_3705___r      1 ATGAAAGTCATCTTTC-TAAAAGACGTAAAAGGCAAAGGGAAAAAAGGCG     49

BSNT_06222___     50 AAGTCAAAAACGTAGCAGACGGTTATGCGCATAACTTTCTAATTAAAAAA     99
                     |||||||.||.||.||.|||||.||.||.||.||||||||.||||||.||
BPUM_3705___r     50 AAGTCAAGAATGTCGCTGACGGATACGCTCACAACTTTCTCATTAAACAA     99

BSNT_06222___    100 GGCCTCGCGGTTGAAGCGAACGCTTCAAAC--ATC--AGCGCGCTAAACG    145
                     ||..|.|||||||||||.|||    |.|||  |||  ||.||..|..|.|
BPUM_3705___r    100 GGGTTAGCGGTTGAAGCAAAC----CCAACGAATCTAAGTGCATTGGAAG    145

BSNT_06222___    146 GACAAAAGCAGAAAGAGAAAAAAGAA-GCCATTGCTGAGCTTGAGCAGGC    194
                     |.||.|||.|.|||||| |||||||| |||.|....||||||||.||.||
BPUM_3705___r    146 GGCAGAAGAACAAAGAG-AAAAAGAATGCCGTCCAAGAGCTTGAACAAGC    194

BSNT_06222___    195 -TAAGAGCTTGAAA-GAGACATTAGAAAAACTGACTGTTGAGCTTAGCGC    242
                      .||.|.||  ||| ||.|||.|.||....||.||.||.||.||.|..||
BPUM_3705___r    195 GAAACAACT--AAAGGAAACACTTGAGGCGCTAACAGTGGAACTAACAGC    242

BSNT_06222___    243 AAAATCAGGTGAGGGCGGCCGTTTATTTGGTTCAGTGACAAGCAAGCAAA    292
                     ||||||||||||.|||||.|||.|.|||||.|||.|.||||||||.||||
BPUM_3705___r    243 AAAATCAGGTGAAGGCGGTCGTCTGTTTGGATCAATTACAAGCAAACAAA    292

BSNT_06222___    293 TTACTGAACAGCTCCAAAAAGACCATAACATTAAAGTAGATAAGCGGAAG    342
                     |..||||..|..|.||||||||.|||.|.||.|||||.||||||||.||.
BPUM_3705___r    293 TCGCTGATAAATTGCAAAAAGATCATCAAATCAAAGTCGATAAGCGCAAA    342

BSNT_06222___    343 CTTGAACTGCCGGACGGCATTCGTGCATTAGGATATACGAACGTGCCTGT    392
                     .|.||.|||...||||.|||.|||||||||||.||.||.||.||.||.||
BPUM_3705___r    343 ATCGAGCTGAATGACGCCATCCGTGCATTAGGTTACACAAATGTACCGGT    392

BSNT_06222___    393 GAAGCTGCATCCTGAAGTGCAGGCTGTGTTAAAGGTACATGTAAAAGAAG    442
                     ||||||.|||||.||.||.||.||...||||||||||||.||.|.||||.
BPUM_3705___r    393 GAAGCTTCATCCAGAGGTACAAGCAACGTTAAAGGTACACGTGACAGAAC    442

BSNT_06222___    443 AAGCTTAA    450
                     ||||.|||
BPUM_3705___r    443 AAGCATAA    450


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