Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03929 and BPUM_3710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_03929___sigV.1.24716.seq
# -bsequence dna-align/BPUM_3710___sigV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03929___sigV-BPUM_3710___sigV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03929___sigV-BPUM_3710___sigV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03929___sigV
# 2: BPUM_3710___sigV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 327/540 (60.6%)
# Similarity: 327/540 (60.6%)
# Gaps: 84/540 (15.6%)
# Score: 830.0
#
#
#=======================================
BSNT_03929___ 1 ATGAAGAAAAAACAAA-----CAACAAAAGCGTTGCTTGTCACATGCATA 45
|||||||||..|.||| .|.||| .|||||..| |.|.||
BPUM_3710___s 1 ATGAAGAAACGAAAAATTGAGGATCAA----TTTGCTGAT----TACGTA 42
BSNT_03929___ 46 ACTGACCATAAGCA-AGATTTCTACAGGTTGGCTTTCAGTTATGTGAAAA 94
|..||.|||||.|| || |||.||..|.|||.|.|..||||||||.||||
BPUM_3710___s 43 ATGGAGCATAAACACAG-TTTTTATCGATTGTCCTATAGTTATGTCAAAA 91
BSNT_03929___ 95 ATCAAGATGACGCATTAGATATTGTTCAGGAATCGATAAAAAAAGCGCTG 144
|||.|||.||.||..|.|||.|.|||||.||..||||..|.|||||.||.
BPUM_3710___s 92 ATCCAGAAGATGCGATGGATGTCGTTCAAGAGGCGATTCATAAAGCACTC 141
BSNT_03929___ 145 AGCTCAGTTGAAACGGT--CAGGAACCCTGAGAC---GATAAAAAGCTGG 189
|..||.|||.|.| ||| .|||| ||.||| |||..|.||||||
BPUM_3710___s 142 AAATCTGTTCACA-GGTTAGAGGA----TGCGACCAAGATGCATAGCTGG 186
BSNT_03929___ 190 TTTTATAAAATTTTAGTG--CGGACAGCCATTGATTTTTTGCGCAAACAA 237
||||||||||||.|.||| || |.|||.|.||.||||| ||.|
BPUM_3710___s 187 TTTTATAAAATTGTGGTGAACG--CTGCCCTAGACTTTTT------ACGA 228
BSNT_03929___ 238 AAAAAGATAAG--------AGTGATGGACGACGAAACGATAGAATTTTTA 279
||.||| ||| |||||..||.||.||.|||.|.||.||.||
BPUM_3710___s 229 AAGAAG--AAGCGGGTGCAAGTGACAGATGATGACACGCTTGAGTTCTT- 275
BSNT_03929___ 280 AGCAAAGGAAAG-GA---AGACCATTACAAGGATACTGATCTCTATGA-- 323
|.|||||| | || |||...|||..|.|||...|||.|| .||
BPUM_3710___s 276 ATCAAAGG---GTGAATCAGATATTTATGAAGATCAAGATGTC--AGACG 320
BSNT_03929___ 324 AGCGCTTGACGAATTGCCGTACCGCTATAAAAC----CATTATTATTTTA 369
|||..|.||.||.|||| |||.|||..|.| |||.|||||.||.
BPUM_3710___s 321 AGCCATAGAGGATTTGC----CCGATATGTACCGGGTCATCATTATCTTG 366
BSNT_03929___ 370 CGTTTTTTTGAAGACCTCAAATTAGAAGAAATTGCGGAAATTACAGGAGA 419
.|.||.||||||||..|.|||.||||.||.||.||..|.|||...|.|||
BPUM_3710___s 367 AGATTCTTTGAAGATTTAAAACTAGAGGACATCGCCCACATTCTCGAAGA 416
BSNT_03929___ 420 AAACACGAATACCGTCAAAACGCGCCTATACAGAGCATTGAAGCTGATGC 469
||||...||.|||.|||||||..|..||||.|..||.|||..|||
BPUM_3710___s 417 AAACGAAAACACCATCAAAACAAGATTATATAAGGCGTTGCGGCT----- 461
BSNT_03929___ 470 GCATT---CAGCTGA-----CGAAGGAGGATCTTTCTTAA 501
|| .||..|| ||.|||||||..| .|||
BPUM_3710___s 462 ---TTTAAAAGTAGAATTATCGCAGGAGGAAAT---ATAA 495
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