Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03185 and BPUM_3714
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03185___yodD.1.24716.seq
# -bsequence dna-align/BPUM_3714.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03185___yodD-BPUM_3714.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03185___yodD-BPUM_3714.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03185___yodD
# 2: BPUM_3714
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 662
# Identity: 407/662 (61.5%)
# Similarity: 407/662 (61.5%)
# Gaps: 112/662 (16.9%)
# Score: 1069.5
#
#
#=======================================
BSNT_03185___ 1 ---ATGAAGCATATTTATGAAAAAGGAACATCTGA-CAACGTAC---TTT 43
|||||.|||.|||.|..||||||||....||| |||.| || |||
BPUM_3714 1 ATGATGAAACATCTTTTTCGAAAAGGAAAGAATGATCAAAG-ACCTGTTT 49
BSNT_03185___ 44 TGCTGT---TGCATGGCACGGGCGGTAATGAACACGAT------CTGCTT 84
||.|.| |||||||.||.|||||.|..|||.|.||| |.||||
BPUM_3714 50 TGTTATTACTGCATGGTACTGGCGGGACAGAAGAAGATTTATTGCCGCTT 99
BSNT_03185___ 85 TC--ATTGGGGCGGTTTAT--AGACCCTAATGCCCATTTGCTTGGTGTCA 130
.| ||| .||||.|| .|||.||..|| |||||.||||.|
BPUM_3714 100 GCCGATT----TGGTTGATGCTGACGCTTCTG------TGCTTAGTGTGA 139
BSNT_03185___ 131 GAGGATCGGTGCTTGAAAATGGAATGCCGCGATTTTTCAAACGTCTGAG- 179
|||||...|||.|.|||||.||.||||||||.|||||||.|||| |.||
BPUM_3714 140 GAGGAAATGTGTTGGAAAACGGTATGCCGCGCTTTTTCAGACGT-TTAGC 188
BSNT_03185___ 180 TGAAGGAGTTTTTGATGAAAAAGATCTTGTGGTGCGGACAAGA-GAATTG 228
.||.||..||||.|||||..|.|||.|..|.|.|||||| ||| |||.||
BPUM_3714 189 AGAGGGTATTTTCGATGAGCAGGATTTAATTGAGCGGAC-AGAGGAACTG 237
BSNT_03185___ 229 -AAAGATTTTATCGACGAGGCTGCAG--AAACGCATCAGTTTGATCGCGG 275
|.|.| ||||||||.||.||.|||| ||| .||...||.|||||...
BPUM_3714 238 TATACA-TTTATCGAAGACGCAGCAGGTAAA--TATGGATTCGATCGTCA 284
BSNT_03185___ 276 CAAAGTGATTGCAGTCGGTTATTCAAACGGCGCAAACATTGCGGCAAGCC 325
.||.||..|.|||.||||.|||||.||.||.||.||||||||.|.|||.|
BPUM_3714 285 TAATGTCGTCGCACTCGGATATTCCAATGGGGCGAACATTGCAGGAAGTC 334
BSNT_03185___ 326 TGCTTTTTCATTATAAAGATGTGTTAAAAGGGGCTATTCTGCATCATCCA 375
|..|.||.|||||..|.||||.|||||||||.||.||.||||||||||||
BPUM_3714 335 TTTTATTCCATTACGAGGATGCGTTAAAAGGAGCGATCCTGCATCATCCA 384
BSNT_03185___ 376 ATGGTTCC--GATTCGGGGTATCGAGCTGCC-TGATATGGCGGGGCTCCC 422
|||||||| ||..|||.||.|| ..|||| |.|| ||||||||...|.
BPUM_3714 385 ATGGTTCCAAGACGCGGTGTTTC--ATTGCCTTCAT-TGGCGGGGAAACA 431
BSNT_03185___ 423 TGTTTTTATCGGTGCCGG-GAAATACGATCCTCTTTGC--ACGAAGGAAG 469
.||.|||||.|..||.|| |||| |.||.||..|.||| ||.| ||.|
BPUM_3714 432 AGTCTTTATTGCAGCTGGTGAAA-ATGACCCAATGTGCCGACCA--GAGG 478
BSNT_03185___ 470 AATCAGAAGAGCTTTACCGCTATTTACGTGACAGC--GGGGCA------- 510
|||||.||||.||..| ||.||| .|.|| ||.|||
BPUM_3714 479 AATCACAAGAACTCGA--GCAATT------GCTGCAAGGCGCAGGCGCTT 520
BSNT_03185___ 511 ---TCAGCCTCCGTTTTCTGGCAGGACGGGGGCCATCAGCTGACTCAGCA 557
|||..||.|.| |||.|..|..|.||.||||||.|.||...|.|
BPUM_3714 521 CGGTCACACTACAT----TGGGAAAATCGCGGACATCAGTTAACGAGGGA 566
BSNT_03185___ 558 TGAAGCTGAACAGGCTCGTGAATGGTACAAAGAGGCGATT---GTAT--- 601
.|||| ||| |||.| |.||| ||| ||||
BPUM_3714 567 AGAAG----------TCG---ATGCT-----GCGGC-ATTATGGTATCGT 597
BSNT_03185___ 602 ----AA------ 603
||
BPUM_3714 598 CGTCAATTTTAA 609
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