Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06272 and BPUM_3721

See Amino acid alignment / Visit BSNT_06272 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:42
# Commandline: needle
#    -asequence dna-align/BSNT_06272___yyaF.1.24716.seq
#    -bsequence dna-align/BPUM_3721___yyaF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06272___yyaF-BPUM_3721___yyaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06272___yyaF-BPUM_3721___yyaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06272___yyaF
# 2: BPUM_3721___yyaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1109
# Identity:     866/1109 (78.1%)
# Similarity:   866/1109 (78.1%)
# Gaps:          16/1109 ( 1.4%)
# Score: 3290.5
# 
#
#=======================================

BSNT_06272___      1 ATGGCTTTAACAGCTGGAATTGTTGGTTTGCCGAACGTCGGAAAATCAAC     50
                     |||||||||||||||||.||||||||.||.||.||||||||.||.|||||
BPUM_3721___y      1 ATGGCTTTAACAGCTGGTATTGTTGGCTTACCTAACGTCGGGAAGTCAAC     50

BSNT_06272___     51 ACTATTTAACGCAATTACACAGGCCGGTGCCGAATCAGCCAACTACCCGT    100
                     .||||||||.||||||||||||||.||.||.||.||.||.|||||.||||
BPUM_3721___y     51 GCTATTTAATGCAATTACACAGGCTGGAGCGGAGTCTGCTAACTATCCGT    100

BSNT_06272___    101 TCTGTACAATTGATCCGAACGTGGGAATTGTAGAGGTGCCGGATGATCGT    150
                     |.|||||.||||||||.|||||.|||||||||||.||.||.||.||.|||
BPUM_3721___y    101 TTTGTACCATTGATCCAAACGTCGGAATTGTAGAAGTTCCAGACGAGCGT    150

BSNT_06272___    151 CTGCAAAAGCTGACTGAGCTGGTCAACCCGAAGAAGACTGTGCCGACTGC    200
                     .|||||||.||.||.||..||||..|.|||||.|||||.||.||||||||
BPUM_3721___y    151 TTGCAAAAACTAACAGAATTGGTGCAGCCGAAAAAGACAGTTCCGACTGC    200

BSNT_06272___    201 TTTTGAATTCACTGATATTGCAGGGATTGT-AAAGGGCGCATCTAAAGGA    249
                     |||||||||||||||||||||.||.||||| |||||| ||.||.|||||.
BPUM_3721___y    201 TTTTGAATTCACTGATATTGCCGGTATTGTCAAAGGG-GCTTCAAAAGGT    249

BSNT_06272___    250 GAAGGACTCGGCAACAAGTTCCTATCTCATATTCGCCAAGTTGACGCGAT    299
                     |||||..|.||.||.||.|||||.||.||.|||||.|||||.||.||.||
BPUM_3721___y    250 GAAGGTTTAGGGAATAAATTCCTTTCGCACATTCGTCAAGTAGATGCAAT    299

BSNT_06272___    300 TTGCCACGTTGTCCGTGCTTTTTCCGATGACAACATTACACACGTTTCCG    349
                     .||.|||||.||..|.||||||.|.|||||.|||||.||.|||||.||.|
BPUM_3721___y    300 CTGTCACGTGGTGAGAGCTTTTGCTGATGATAACATCACGCACGTATCAG    349

BSNT_06272___    350 GAAAGGTTGATCC-GATTGATGACATTGAAACGATCAACCTTGAGCTGAT    398
                     |.||||||||.|| |..|.| ||.||.|||||.||.||..|.|||.||||
BPUM_3721___y    350 GTAAGGTTGACCCTGTGTCA-GATATCGAAACCATTAATTTAGAGTTGAT    398

BSNT_06272___    399 CCTCGCTGATATGGAAACGGTTGAAAAGCGGATTACACGCGTCAGCAAGC    448
                     ..|.||||||.|.|||||.||||||||.||..|..|.||.||.||.||||
BPUM_3721___y    399 TTTGGCTGATTTAGAAACAGTTGAAAAACGTTTGGCTCGTGTGAGTAAGC    448

BSNT_06272___    449 TTGCGAAGCAAAAAGATAAAGACGCTGTATTTGAGTTTGAGATTTTATCT    498
                     ||||.||.|||||.|||||.||.||.|||..|||.|||||.|||||.||.
BPUM_3721___y    449 TTGCAAAACAAAAGGATAAGGAAGCGGTAGCTGAATTTGATATTTTGTCG    498

BSNT_06272___    499 AAACTGAAAG-AAGCGTTTGAGAG-TGAAAAGCCTGCTCGATCTGTAGAA    546
                     ||.|| ||.| |.||.||||| || ||..||..|.||..|||||||||||
BPUM_3721___y    499 AAGCT-AATGCATGCATTTGA-AGCTGGGAAATCGGCAAGATCTGTAGAA    546

BSNT_06272___    547 TTCACTGAGGAGCAGCAAAAGCTTGTGAAGCAGCTCCATTTACTGACTTC    596
                     ||.||.||||||||.||.||.||||||||.|||||.||||||||.||.||
BPUM_3721___y    547 TTTACAGAGGAGCAACAGAAACTTGTGAAACAGCTTCATTTACTCACATC    596

BSNT_06272___    597 GAAGCCTATTTTGTACGTGGCCAACGTAAGTGAAGATGAAGTTGCTGATC    646
                     .||.||..||.|.||.||.||.||.||.|||||.||.|||||.||.||| 
BPUM_3721___y    597 TAAACCAGTTCTTTATGTAGCAAATGTGAGTGAGGACGAAGTAGCAGAT-    645

BSNT_06272___    647 CAT--CTGGCAATGAAAATGT--AGCGAAGATTCGCGAGTACGCTGCCGG    692
                     |||  | |||||.||..||||  |||  |.||.||.||||..|||.||||
BPUM_3721___y    646 CATGAC-GGCAACGAGTATGTGCAGC--AAATCCGTGAGTTTGCTTCCGG    692

BSNT_06272___    693 CGAAAACGCAGAAGTTATCGTTGTATGTGCAAAAATCGAATCTGAAATCG    742
                     .|||||.||.|||||.|||||.||||||||.||.|||||.||||||||.|
BPUM_3721___y    693 TGAAAATGCTGAAGTCATCGTCGTATGTGCGAAGATCGAGTCTGAAATTG    742

BSNT_06272___    743 CTGAGCTTGAAGGCGAAGAAAAGCAAATGTTCTTGGAAGAGCTGGGCATT    792
                     |.|||||||||||.|||||.||.||.||||||.|.||||||||.||||||
BPUM_3721___y    743 CAGAGCTTGAAGGGGAAGAGAAACAGATGTTCCTTGAAGAGCTTGGCATT    792

BSNT_06272___    793 CAAGAATCAGGTCTTGATCAGCTGATCAAAGCGTCTTACTCTCTTCTCGG    842
                     .||||.||||||||.|||||||||||..||||.|||||.||.|||||.||
BPUM_3721___y    793 AAAGAGTCAGGTCTAGATCAGCTGATTCAAGCATCTTATTCACTTCTTGG    842

BSNT_06272___    843 CCTCGCAACATATTTCACAGCCGGAGAACAGGAAGTCAGAGCTTGGACAT    892
                     ..|.||.||.|||||||||||.||.||.||||||||..|.||||||||.|
BPUM_3721___y    843 TTTAGCTACTTATTTCACAGCAGGTGAGCAGGAAGTACGCGCTTGGACGT    892

BSNT_06272___    893 TCAAAAAAGGCATGAAAGCACCTGAGTGTGCAGGAATTATTCATAGTGAC    942
                     |.|||||.||.|||||.||.||.||.|||||.|||||.|||||||..|||
BPUM_3721___y    893 TTAAAAAGGGAATGAAGGCGCCGGAATGTGCTGGAATCATTCATACAGAC    942

BSNT_06272___    943 TTTGAGCGGGGCTTCATTCGTGCTGAGACAGTTGCTTATGAGGATCTTCT    992
                     ||||||||.||.||||||||||||||.||.|||||.|||||.|||.|.||
BPUM_3721___y    943 TTTGAGCGTGGGTTCATTCGTGCTGAAACGGTTGCATATGAAGATTTACT    992

BSNT_06272___    993 TGCGGGCGGCGGTATGGCAGGAGCTAAAGAGGCAGGAAAAGTCCGCCTTG   1042
                     |||.|||||..|.|||.|.|..||.||||||||.|||||||||||.||.|
BPUM_3721___y    993 TGCTGGCGGGAGCATGTCTGCTGCAAAAGAGGCTGGAAAAGTCCGTCTAG   1042

BSNT_06272___   1043 AAGGGAAAGAATATGTGGTCCAAGACGGAGATGTTATTCATTTCCGATTT   1092
                     ||||.|||||||||||.||..||||.|||||.||||||||||||||.|||
BPUM_3721___y   1043 AAGGTAAAGAATATGTAGTGAAAGATGGAGACGTTATTCATTTCCGTTTT   1092

BSNT_06272___   1093 AATGTATAG   1101
                     |||||||||
BPUM_3721___y   1093 AATGTATAG   1101


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