Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06277 and BPUM_3725
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_06277___yyaD.1.24716.seq
# -bsequence dna-align/BPUM_3725___yyaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06277___yyaD-BPUM_3725___yyaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06277___yyaD-BPUM_3725___yyaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06277___yyaD
# 2: BPUM_3725___yyaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1081
# Identity: 713/1081 (66.0%)
# Similarity: 713/1081 (66.0%)
# Gaps: 86/1081 ( 8.0%)
# Score: 2169.0
#
#
#=======================================
BSNT_06277___ 1 GTG------TTGTGGAGAGCCGGAATGAA-GTGGATGCTGCTCATATTAG 43
||| .|||||| ||.|.|..|.|| |||||.|||..|.||.||||
BPUM_3725___y 1 GTGATGATTGTGTGGA-AGGCTGGTTCAAGGTGGACGCTTTTAATTTTAG 49
BSNT_06277___ 44 GGAGCCTGATTGGGGCCGGATATGCGAGCGGTCAGGAGATATGGCAGTTT 93
|.|||.|.||.||.||.||.|||||...|||.||.||.||.|||||||||
BPUM_3725___y 50 GAAGCTTAATAGGAGCGGGGTATGCTTCCGGCCAAGAAATTTGGCAGTTT 99
BSNT_06277___ 94 TTTGGGGCGGAAAGCGGACTTGCTATTGTGCTGTTTACAATTATGTTCAT 143
|||||....||.||.|||||.||.|||.|.|||||||||.|.||||||||
BPUM_3725___y 100 TTTGGCATTGATAGTGGACTAGCCATTCTACTGTTTACATTGATGTTCAT 149
BSNT_06277___ 144 TTTCTCGTCTTATATTGTGATGAAAATCAGTTTTAAAGTTCAATCCACTC 193
..|.||..|.|||.|.|||.|.|||||.||||.|.|.||.|...||..||
BPUM_3725___y 150 GCTGTCTACCTATGTGGTGTTAAAAATTAGTTATGAGGTACGTGCCGATC 199
BSNT_06277___ 194 ATTTTCTGCCGGTTCTGGAGCATTTAATGGGGCCATGGCTGGCGAAAATT 243
|.|||.||||.||.||.||||...|..|.||.|||||||||||.|||.|.
BPUM_3725___y 200 ACTTTGTGCCAGTGCTAGAGCGGCTTGTCGGTCCATGGCTGGCTAAAGTG 249
BSNT_06277___ 244 TATGATGTCCTCATCATTTTTTATTTGTTTTCGACGACTATGGTGATGAT 293
|||||.||..|.||..|..|||||||.||..||||.||.|..||.|||||
BPUM_3725___y 250 TATGACGTTTTAATTGTCCTTTATTTATTCACGACAACGACAGTCATGAT 299
BSNT_06277___ 294 TGCCGGAGGCGGTGTGACCCTGCAAATGTA-CAAGCTTCCTTTCTGGTGG 342
||||||.||.||.|||||.||..|.||||| ||.| |.||.||.|||..|
BPUM_3725___y 300 TGCCGGTGGTGGGGTGACGCTAGAGATGTATCATG-TGCCATTTTGGGTG 348
BSNT_06277___ 343 GGAATCACGCTG--ATTTG--TATTGTGACA-GTGTGTTTGTTTTTGTGG 387
||.|| ||.|| .|||| ||||.| || .|.||.|| |||||.|||
BPUM_3725___y 349 GGTAT--CGGTGCCTTTTGTCTATTTT--CATTTATGATT-TTTTTCTGG 393
BSNT_06277___ 388 GATGTGAAAGGAATATTATCTATAAATAGTATTTTGATTCCTGTGTTAGT 437
|||||||||||..|.||||||.|.|||..|.|..|.||.||..|.||.||
BPUM_3725___y 394 GATGTGAAAGGGCTCTTATCTGTGAATGCTTTCATTATACCAATTTTGGT 443
BSNT_06277___ 438 AGCGGGGCTTTTATATGCGCTGATCTCCTTTCAGA-GCACACATCACCAT 486
.||||||||..|.||||||.|..|.|..|.|.|.| |.|| |||.|.|||
BPUM_3725___y 444 GGCGGGGCTCATCTATGCGTTTGTTTTTTATTATATGAAC-CATGATCAT 492
BSNT_06277___ 487 ACGTGGACGATTGATTTGTCCCAGCAGTATAACTGGCCTGCGAGCATTAC 536
|.||||..|||||||||....||||||||.||.||||||||.||.|||..
BPUM_3725___y 493 ATGTGGCGGATTGATTTTGGACAGCAGTACAATTGGCCTGCCAGTATTGT 542
BSNT_06277___ 537 GTTTACCTCTTTAAACATCCTTTCAGTTGTTGCGATTTTATCCTCTGTTG 586
.|||.|.|||||.||.||..|.||.||.||.||..|..|.||.||.||||
BPUM_3725___y 543 CTTTGCTTCTTTGAATATATTATCTGTGGTCGCAGTGCTGTCTTCGGTTG 592
BSNT_06277___ 587 GGAAAGAGATGAAAGGGCTCGGAGAAGCAAAAATCGCAAGTGTGGCAAGC 636
|||||||.|||||.||.||.|||||.||||||.|.||.|||.|...|||.
BPUM_3725___y 593 GGAAAGAAATGAAGGGACTTGGAGAGGCAAAAGTGGCGAGTATATTAAGT 642
BSNT_06277___ 637 GGTCTTATTTTTGGCGTGATCTCATTTGTTTATAATGAAACGTTGGTGGA 686
|||||.||||||||.||.|||||.|..||.|||||.||||...||||.||
BPUM_3725___y 643 GGTCTGATTTTTGGGGTTATCTCGTACGTGTATAACGAAATACTGGTTGA 692
BSNT_06277___ 687 ----GCTGGCGGGCTCCCTTTC-TCAGTTTGAA---ATACCGCTGTTTGC 728
.||||..| |||.|| .|| ||| ||.||..|||||.|
BPUM_3725___y 693 TATTTCTGGGAG----CCTATCAGCA----GAAGGCATTCCCTTGTTTAC 734
BSNT_06277___ 729 CGTTCTGGAGGGTGCGCC----TTATT-TCCTTTTTTTATGTATGACGGC 773
.||..|.||.||.||||| |.||| | ||.|||| ||||||.|.
BPUM_3725___y 735 AGTATTAGAAGGAGCGCCAACATCATTGT--TTGTTTT---TATGACCGT 779
BSNT_06277___ 774 GGTGCTGTGCCTGGCGATTTACACGACGACGGTAGCAGGTTTGCTGGGGC 823
.||.||.||.||.||.|||||.||||||||.|..||||||||..|.||..
BPUM_3725___y 780 TGTCCTTTGTCTAGCCATTTATACGACGACAGCGGCAGGTTTATTTGGTT 829
BSNT_06277___ 824 TGTCCAGCCGGCTGATGGCGTTTAT-TCATATGCCTAGATGGATGATTGT 872
|.||||||||..||.|..|.|||.| .||| |||||.|||||.||.|.||
BPUM_3725___y 830 TATCCAGCCGAATGCTCTCTTTTGTACCAT-TGCCTCGATGGTTGGTGGT 878
BSNT_06277___ 873 GTTGATTTTGTTAGTGTTAATGGTACCTTTTACTTCTTTCGGATTTTCTG 922
|.|.||..||.|..|.|||||||..|||||.||.|||.|.||.|||.|.|
BPUM_3725___y 879 GCTCATAATGCTTCTTTTAATGGCGCCTTTGACATCTCTTGGGTTTGCCG 928
BSNT_06277___ 923 ATTTGATCGCGTTCTTGTATCCGATATATGGGATGCTCAATTTGTATTTG 972
|||||||.||.|||||||||||.||||||.|..||||.|||.||||||||
BPUM_3725___y 929 ATTTGATTGCTTTCTTGTATCCAATATATAGCTTGCTGAATCTGTATTTG 978
BSNT_06277___ 973 TTAGTTTGTCTGCTCTTATATCCTATTTTGAGTAAATGGAAA-------- 1014
.|.||.|||.|..|..|||||||.|||||.||||||..||.|
BPUM_3725___y 979 CTTGTCTGTTTAATGCTATATCCGATTTTAAGTAAAAAGATATTTTCTCA 1028
BSNT_06277___ 1015 ---TAA------------------------- 1017
|||
BPUM_3725___y 1029 CCCTAAAAATTATATTGATAAAATAAAATAA 1059
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