Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06292 and BPUM_3736

See Amino acid alignment / Visit BSNT_06292 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_06292___rnpA.1.24716.seq
#    -bsequence dna-align/BPUM_3736___rnpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06292___rnpA-BPUM_3736___rnpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06292___rnpA-BPUM_3736___rnpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06292___rnpA
# 2: BPUM_3736___rnpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 377
# Identity:     258/377 (68.4%)
# Similarity:   258/377 (68.4%)
# Gaps:          43/377 (11.4%)
# Score: 853.5
# 
#
#=======================================

BSNT_06292___      1 TTGAAGAAGCGAAATCGTTTAAAGAAAAATGAAGATTTTCAAAAAGTGTT     50
                     .|||||||||||||..|..||||.|||||||||||.||||||||||||||
BPUM_3736___r      1 ATGAAGAAGCGAAACAGGCTAAAAAAAAATGAAGAGTTTCAAAAAGTGTT     50

BSNT_06292___     51 TAAACATGGGACATCAGTTGCAAACCGCCAGTTTGTCTTATATAC--GCT     98
                     ||||.|.||...||||.|.||.||.||.||.||.|  ||||.|||  |||
BPUM_3736___r     51 TAAAAAAGGTCAATCAATGGCGAATCGTCAATTCG--TTATTTACCAGCT     98

BSNT_06292___     99 TGATCAGCCTGAAAAT---GATGAACTGCGTGTCGGGCTTTCCGTCAGCA    145
                     .|||||.||   ||||   ||||||||||||.|.||..|.||.||.||.|
BPUM_3736___r     99 GGATCAACC---AAATCAAGATGAACTGCGTTTAGGATTGTCTGTGAGTA    145

BSNT_06292___    146 AAAAAATTGGCAATGCTGTGATGCGAAATCGGATCAAACGTTTGATTCGG    195
                     |.||.|||||.|||||.||||||.|||||||.||.|||||..||||.||.
BPUM_3736___r    146 AGAAGATTGGTAATGCAGTGATGAGAAATCGAATTAAACGACTGATCCGT    195

BSNT_06292___    196 CAGGCCTTTCTTGAAGAGAAAG------AGAGACTGAAGGAAAAGGATTA    239
                     ||||..|||.|   ||||.|||      ||..|..|.|.|||||.||.||
BPUM_3736___r    196 CAGGTGTTTTT---AGAGGAAGGTCATAAGTTAAAGCAAGAAAAAGACTA    242

BSNT_06292___    240 CATCATTATTGCCAGAAAACCGGCGAGCCAGCTGACATTTGAGGAAACGA    289
                     |||..|.|||||.||||||||.||.||..|..||||.|||||.|||||  
BPUM_3736___r    243 CATTGTCATTGCGAGAAAACCAGCAAGTGAATTGACCTTTGAAGAAAC--    290

BSNT_06292___    290 AAAAAAG--TTTGCAGCATCTATTCAGAAAGTC-----TTCATTATATAA    332
                     |||.|||  |.|.||.|||.||||.|||||.||     ||.||.| |.||
BPUM_3736___r    291 AAAGAAGTCTCTCCAACATTTATTTAGAAAATCCGCTGTTTATCA-ACAA    339

BSNT_06292___    333 -----GAAA---TCTTCGTCAAAGTAG    351
                          ||||   |||||||.|      
BPUM_3736___r    340 CAACCGAAAAAGTCTTCGTAA------    360


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