Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00040 and BSU00200

See Amino acid alignment / Visit BSNT_00040 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:15:53
# Commandline: needle
#    -asequence dna-align/BSNT_00040___yaaK.1.22522.seq
#    -bsequence dna-align/BSU00200___yaaK.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00040___yaaK-BSU00200___yaaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00040___yaaK-BSU00200___yaaK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00040___yaaK
# 2: BSU00200___yaaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 324
# Identity:     303/324 (93.5%)
# Similarity:   303/324 (93.5%)
# Gaps:          21/324 ( 6.5%)
# Score: 1515.0
# 
#
#=======================================

BSNT_00040___      1 ---------------------ATGCAAAAAATGATGAAACAAATGCAAAA     29
                                          |||||||||||||||||||||||||||||
BSU00200___ya      1 ATGCGTGGCGGAATGGGTAATATGCAAAAAATGATGAAACAAATGCAAAA     50

BSNT_00040___     30 AATGCAAAAGGACATGGCGAAGGCTCAAGAAGAGCTTGCAGAAAAGGTTG     79
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00200___ya     51 AATGCAAAAGGACATGGCGAAGGCTCAAGAAGAGCTTGCAGAAAAGGTTG    100

BSNT_00040___     80 TTGAAGGAACTGCAGGCGGCGGTATGGTAACAGTAAAAGCAAACGGCCAA    129
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00200___ya    101 TTGAAGGAACTGCAGGCGGCGGTATGGTAACAGTAAAAGCAAACGGCCAA    150

BSNT_00040___    130 AAAGAAATCCTGGATGTTATCATCAAAGAAGAAGTCGTTGATCCTGAAGA    179
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00200___ya    151 AAAGAAATCCTGGATGTTATCATCAAAGAAGAAGTCGTTGATCCTGAAGA    200

BSNT_00040___    180 TATTGATATGCTTCAAGATTTAGTGCTTGCTGCAACGAATGAAGCTTTGA    229
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00200___ya    201 TATTGATATGCTTCAAGATTTAGTGCTTGCTGCAACGAATGAAGCTTTGA    250

BSNT_00040___    230 AAAAAGTTGACGAAATCACAAACGAAACAATGGGTCAATTTACAAAGGGA    279
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00200___ya    251 AAAAAGTTGACGAAATCACAAACGAAACAATGGGTCAATTTACAAAGGGA    300

BSNT_00040___    280 ATGAACATGCCAGGTTTATTCTAG    303
                     ||||||||||||||||||||||||
BSU00200___ya    301 ATGAACATGCCAGGTTTATTCTAG    324


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