Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00175 and BSU00840

See Amino acid alignment / Visit BSNT_00175 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:05
# Commandline: needle
#    -asequence dna-align/BSNT_00175.1.22522.seq
#    -bsequence dna-align/BSU00840___mcsA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00175-BSU00840___mcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00175-BSU00840___mcsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00175
# 2: BSU00840___mcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity:     379/558 (67.9%)
# Similarity:   379/558 (67.9%)
# Gaps:         177/558 (31.7%)
# Score: 1887.0
# 
#
#=======================================

BSNT_00175         0 --------------------------------------------------      0
                                                                       
BSU00840___mc      1 TTGATTTGTCAAGAGTGCCACGAGAGACCAGCCACTTTTCACTTTACAAA     50

BSNT_00175         0 --------------------------------------------------      0
                                                                       
BSU00840___mc     51 GGTTGTTAACGGAGAAAAAATAGAAGTTCATATTTGTGAACAATGTGCCA    100

BSNT_00175         0 --------------------------------------------------      0
                                                                       
BSU00840___mc    101 AAGAAAATAGTGATTCATATGGTATAAGTGCAAATCAGGGTTTCTCTATT    150

BSNT_00175         1 ---------------------------ATGGATTCTTCATTTCAAAATGC     23
                                                |||||||||||||||||||||||
BSU00840___mc    151 CATAATTTACTTTCGGGTTTACTGAACATGGATTCTTCATTTCAAAATGC    200

BSNT_00175        24 AGGAACTCAAATGTTCAGTCACTCGGAGCAAATATCTGCTTGTCCGAAAT     73
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00840___mc    201 AGGAACTCAAATGTTCAGTCACTCGGAGCAAATATCTGCTTGTCCGAAAT    250

BSNT_00175        74 GCGGAATGACTTTTCAGCAATTCAGAAAAATTGGCCGTTTTGGATGTTCG    123
                     |||||||||||||||||||||||||||||||||||||||||||||||||.
BSU00840___mc    251 GCGGAATGACTTTTCAGCAATTCAGAAAAATTGGCCGTTTTGGATGTTCT    300

BSNT_00175       124 GAATGTTACAAAACATTTCATAGCAACATTACACCAATCCTACGTAAAGT    173
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00840___mc    301 GAATGTTACAAAACATTTCATAGCAACATTACACCAATCCTACGTAAAGT    350

BSNT_00175       174 GCACAGCGGAAACACTGTGCATGCAGGTAAGATACCGAAACGAATAGGCG    223
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00840___mc    351 GCACAGCGGAAACACTGTGCATGCAGGTAAGATACCGAAACGAATAGGCG    400

BSNT_00175       224 GCAATCTTCATGTCAGACGGCAGATTGATATGCTAAAAAAGGAATTAGAA    273
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00840___mc    401 GCAATCTTCATGTCAGACGGCAGATTGATATGCTAAAAAAGGAATTAGAA    450

BSNT_00175       274 TCCTTAATCCATCAAGAAGAATTTGAAAATGCAGCTCATGTAAGAGATCA    323
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00840___mc    451 TCCTTAATCCATCAAGAAGAATTTGAAAATGCAGCTCATGTAAGAGATCA    500

BSNT_00175       324 AATTCGTTCATTAGAACAATCACTCAAAAGTACAGATAGTGAGGAGGAAC    373
                     ||||||||.|||||||||||||||||||||||||||||||||||||||||
BSU00840___mc    501 AATTCGTTTATTAGAACAATCACTCAAAAGTACAGATAGTGAGGAGGAAC    550

BSNT_00175       374 AGGAGTAA    381
                     ||||||||
BSU00840___mc    551 AGGAGTAA    558


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