Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00538 and BSU03040

See Amino acid alignment / Visit BSNT_00538 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:43
# Commandline: needle
#    -asequence dna-align/BSNT_00538.1.22522.seq
#    -bsequence dna-align/BSU03040___amyE.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00538-BSU03040___amyE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00538-BSU03040___amyE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00538
# 2: BSU03040___amyE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1980
# Identity:    1424/1980 (71.9%)
# Similarity:  1424/1980 (71.9%)
# Gaps:         546/1980 (27.6%)
# Score: 7054.5
# 
#
#=======================================

BSNT_00538         1 ATGTTTGCAAAACGATTCAAAACCTCTTTACTGCCGTTATTCGCTGGATT     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am      1 ATGTTTGCAAAACGATTCAAAACCTCTTTACTGCCGTTATTCGCTGGATT     50

BSNT_00538        51 TTTATTGCTGTTTTATTTGGTTCTGGCAGGACCGGCGGCTGCGAGTGCTG    100
                     |||||||||||||.||||||||||||||||||||||||||||||||||||
BSU03040___am     51 TTTATTGCTGTTTCATTTGGTTCTGGCAGGACCGGCGGCTGCGAGTGCTG    100

BSNT_00538       101 AAACGGCGAACAAATCGAATGAGCTTACAGCACCGTCGATCAAAAGCGGA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    101 AAACGGCGAACAAATCGAATGAGCTTACAGCACCGTCGATCAAAAGCGGA    150

BSNT_00538       151 ACCATTCTTCATGCATGGAATTGGTCGTTCAATACGTTAAAACACAATAT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    151 ACCATTCTTCATGCATGGAATTGGTCGTTCAATACGTTAAAACACAATAT    200

BSNT_00538       201 GAAGGATATTCATGATGCAGGATATACAGCCATTCAGACATCTCCGATTA    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    201 GAAGGATATTCATGATGCAGGATATACAGCCATTCAGACATCTCCGATTA    250

BSNT_00538       251 ACCAAGTAAAGGAAGGGAATCAAGGAGATAAAAGCATGTCGAACTGGTAC    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    251 ACCAAGTAAAGGAAGGGAATCAAGGAGATAAAAGCATGTCGAACTGGTAC    300

BSNT_00538       301 TGGCTGTATCAGCCGACATCGTATCAAATTGGCAACCGTTACTTAGGTAC    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    301 TGGCTGTATCAGCCGACATCGTATCAAATTGGCAACCGTTACTTAGGTAC    350

BSNT_00538       351 TGAACAAGAATTTAAAGAAATGTGTGCAGCCGCTGAAGAATATGGCATAA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    351 TGAACAAGAATTTAAAGAAATGTGTGCAGCCGCTGAAGAATATGGCATAA    400

BSNT_00538       401 AGGTCATTGTTGACGCGGTCATCAATCATACCACCAGTGATTATGCCGCG    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    401 AGGTCATTGTTGACGCGGTCATCAATCATACCACCAGTGATTATGCCGCG    450

BSNT_00538       451 ATTTCCAATGAGGTTAAGAGTATTCCAAACTGGACACATGGAAACACACA    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    451 ATTTCCAATGAGGTTAAGAGTATTCCAAACTGGACACATGGAAACACACA    500

BSNT_00538       501 AATTAAAAACTGGTCTGATCGATGGGATGTCACGCAGAATTCATTGCCCG    550
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
BSU03040___am    501 AATTAAAAACTGGTCTGATCGATGGGATGTCACGCAGAATTCATTGCTCG    550

BSNT_00538       551 GGCTGTATGACTGGAATACACAAAATACACAAGTACAGTCCTATCTGAAA    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    551 GGCTGTATGACTGGAATACACAAAATACACAAGTACAGTCCTATCTGAAA    600

BSNT_00538       601 CGGTTCTTAGAAAGGGCATTGAATGACGGGGCAGACGGTTTTCGATTTGA    650
                     |||||||||||.||||||||||||||||||||||||||||||||||||||
BSU03040___am    601 CGGTTCTTAGACAGGGCATTGAATGACGGGGCAGACGGTTTTCGATTTGA    650

BSNT_00538       651 TGCCGCCAAACATATAGAGCTTCCGGATGATGGGAGTTACGGCAGTCAAT    700
                     ||||||||||||||||||||||||.||||||||.||||||||||||||||
BSU03040___am    651 TGCCGCCAAACATATAGAGCTTCCAGATGATGGCAGTTACGGCAGTCAAT    700

BSNT_00538       701 TTTGGCCGAATATCACAAATACATCTGCAGAGTTCCAATACGGAGAAATC    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    701 TTTGGCCGAATATCACAAATACATCTGCAGAGTTCCAATACGGAGAAATC    750

BSNT_00538       751 CTGCAGGATAGTGCCTCCAGAGATGCTGCATATGCGAATTATATGGATGT    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    751 CTGCAGGATAGTGCCTCCAGAGATGCTGCATATGCGAATTATATGGATGT    800

BSNT_00538       801 GACAGCGTCTAACTATGGGCATTCCATAAGGTCCGCTTTAAAGAATCGTA    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    801 GACAGCGTCTAACTATGGGCATTCCATAAGGTCCGCTTTAAAGAATCGTA    850

BSNT_00538       851 ATCTGGGCGTGTCGAATATCTCCCACTATGCATCTGATGTGTCTGCGGAC    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    851 ATCTGGGCGTGTCGAATATCTCCCACTATGCATCTGATGTGTCTGCGGAC    900

BSNT_00538       901 AAGCTGGTGACATGGGTGGAGTCGCATGATACGTATGCCAATGATGATGA    950
                     |||||.|||||||||||.||||||||||||||||||||||||||||||||
BSU03040___am    901 AAGCTAGTGACATGGGTAGAGTCGCATGATACGTATGCCAATGATGATGA    950

BSNT_00538       951 AGAGTCGACATGGATGAGCGATGATGATATCCGTTTAGGCTGGGCGGTGA   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am    951 AGAGTCGACATGGATGAGCGATGATGATATCCGTTTAGGCTGGGCGGTGA   1000

BSNT_00538      1001 TAGCTTCTCGTTCAGGCAGTACGCCTCTTTTCTTTTCCAGACCTGAGGGA   1050
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am   1001 TAGCTTCTCGTTCAGGCAGTACGCCTCTTTTCTTTTCCAGACCTGAGGGA   1050

BSNT_00538      1051 GGCGGAAATGGTGTGAGATTCCCGGGGAAAAGCCAAATAGGCGATCGCGG   1100
                     |||||||||||||||||.||||||||||||||||||||||||||||||||
BSU03040___am   1051 GGCGGAAATGGTGTGAGGTTCCCGGGGAAAAGCCAAATAGGCGATCGCGG   1100

BSNT_00538      1101 GAGTGCTTTATTTGAAGATCAGGCTATCACTGCGGTCAATAGATTTCACA   1150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am   1101 GAGTGCTTTATTTGAAGATCAGGCTATCACTGCGGTCAATAGATTTCACA   1150

BSNT_00538      1151 ATGTGATGGCTGGACAGCATGAGGAACTCTCGAACCCGAATGGAAACAAC   1200
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU03040___am   1151 ATGTGATGGCTGGACAGCCTGAGGAACTCTCGAACCCGAATGGAAACAAC   1200

BSNT_00538      1201 CAGATATTTATGAATCAGCGCGGCTCACATGGCGTTGTGCTGGCAAATGC   1250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am   1201 CAGATATTTATGAATCAGCGCGGCTCACATGGCGTTGTGCTGGCAAATGC   1250

BSNT_00538      1251 AGGTTCATCCTCTGTCTCTATCAATACGGCAACAAAATTGCCTGATGGCA   1300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am   1251 AGGTTCATCCTCTGTCTCTATCAATACGGCAACAAAATTGCCTGATGGCA   1300

BSNT_00538      1301 GGTATGACAATAAAGCTGGAGCGGGTTCATTTCAAGTGAACGATGGTAAA   1350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am   1301 GGTATGACAATAAAGCTGGAGCGGGTTCATTTCAAGTGAACGATGGTAAA   1350

BSNT_00538      1351 CTGACAGGCACGATCAATGCCAGGTCTGTAGCTGTGCTTTATCCTGATGA   1400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03040___am   1351 CTGACAGGCACGATCAATGCCAGGTCTGTAGCTGTGCTTTATCCTGATGA   1400

BSNT_00538      1401 TATTG--------------------------------AAATCAGGTGTAA   1418
                     |||||                                |||.|||||||||
BSU03040___am   1401 TATTGCAAAAGCGCCTCATGTTTTCCTTGAGAATTACAAAACAGGTGTAA   1450

BSNT_00538      1419 CACATTCTTTCAATGA----------------------------------   1434
                     ||||||||||||||||                                  
BSU03040___am   1451 CACATTCTTTCAATGATCAACTGACGATTACCTTGCGTGCAGATGCGAAT   1500

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1501 ACAACAAAAGCCGTTTATCAAATCAATAATGGACCAGAGACGGCGTTTAA   1550

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1551 GGATGGAGATCAATTCACAATCGGAAAAGGAGATCCATTTGGCAAAACAT   1600

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1601 ACACCATCATGTTAAAAGGAACGAACAGTGATGGTGTAACGAGGACCGAG   1650

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1651 AAATACAGTTTTGTTAAAAGAGATCCAGCGTCGGCCAAAACCATCGGCTA   1700

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1701 TCAAAATCCGAATCATTGGAGCCAGGTAAATGCTTATATCTATAAACATG   1750

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1751 ATGGGAGCCGAGTAATTGAATTGACCGGATCTTGGCCTGGAAAACCAATG   1800

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1801 ACTAAAAATGCAGACGGAATTTACACGCTGACGCTGCCTGCGGACACGGA   1850

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1851 TACAACCAACGCAAAAGTGATTTTTAATAATGGCAGCGCCCAAGTGCCCG   1900

BSNT_00538      1434 --------------------------------------------------   1434
                                                                       
BSU03040___am   1901 GTCAGAATCAGCCTGGCTTTGATTACGTGCTAAATGGTTTATATAATGAC   1950

BSNT_00538      1434 ------------------------------   1434
                                                   
BSU03040___am   1951 TCGGGCTTAAGCGGTTCTCTTCCCCATTGA   1980


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