Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00693 and BSU03950

See Amino acid alignment / Visit BSNT_00693 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:01
# Commandline: needle
#    -asequence dna-align/BSNT_00693___ycnJ.1.22522.seq
#    -bsequence dna-align/BSU03950___ycnJ.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00693___ycnJ-BSU03950___ycnJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00693___ycnJ-BSU03950___ycnJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00693___ycnJ
# 2: BSU03950___ycnJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1626
# Identity:    1597/1626 (98.2%)
# Similarity:  1597/1626 (98.2%)
# Gaps:           0/1626 ( 0.0%)
# Score: 7869.0
# 
#
#=======================================

BSNT_00693___      1 ATGAAGCGAAACAGATGGTGGATCATTCTTCTGCTTTTTCTTGTTTTCCT     50
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
BSU03950___yc      1 ATGAAGCGAAACAGATGGTGGATCATCCTTCTGCTTTTTCTTGTTTTCCT     50

BSNT_00693___     51 GCCGAAAACAAGCTTTGCTCACGCCTATATTGTCAAATCTTCACCTGGGG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc     51 GCCGAAAACAAGCTTTGCTCACGCCTATATTGTCAAATCTTCACCTGGGG    100

BSNT_00693___    101 AAAACAGCGAATTAAAAAGCGCCCCTGCGCAGGTGGAAATCGAATTTAAT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    101 AAAACAGCGAATTAAAAAGCGCCCCTGCGCAGGTGGAAATCGAATTTAAT    150

BSNT_00693___    151 GAACCGGTTGAAGAAGGGTTTCATTACATTAAAGTCTTTAATTCAAACGG    200
                     |||||||||||||||||||||||||||||||||||||.||||||||||||
BSU03950___yc    151 GAACCGGTTGAAGAAGGGTTTCATTACATTAAAGTCTATAATTCAAACGG    200

BSNT_00693___    201 CGACCGTGTGGATACGGACAAGACTGAAATCAAAAAAGATAATCATCACA    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    201 CGACCGTGTGGATACGGACAAGACTGAAATCAAAAAAGATAATCATCACA    250

BSNT_00693___    251 TCATGACAGTGAAGCTGAAGAAGAATCTGCCTCATGATGTGTACAGAGCG    300
                     ||||||||||||||||||||||||||||||||.|.|||||||||||||||
BSU03950___yc    251 TCATGACAGTGAAGCTGAAGAAGAATCTGCCTAAAGATGTGTACAGAGCG    300

BSNT_00693___    301 GAATGGAATGCCGTATCCGCGGACGGGCATCCTGTTTCTGGCGTCATTCC    350
                     |||||||||||||||||||||||.||.|||||||||||.|||||||||||
BSU03950___yc    301 GAATGGAATGCCGTATCCGCGGATGGACATCCTGTTTCCGGCGTCATTCC    350

BSNT_00693___    351 GTTTAGTATTGGGAAAGCGGATGGCGGATTCAGCAGCCAAAAAGCAGCCG    400
                     |||.|||||.||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    351 GTTCAGTATCGGGAAAGCGGATGGCGGATTCAGCAGCCAAAAAGCAGCCG    400

BSNT_00693___    401 ACTCAGCTCTGAATCCGGGAACAGCAGCAGATCGCGCGATTCTGTATACA    450
                     |.|||||.||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    401 ATTCAGCGCTGAATCCGGGAACAGCAGCAGATCGCGCGATTCTGTATACA    450

BSNT_00693___    451 GCCTTATCTCTGTTTATCGGAACGGTTTTCTTCCATCTTTTCTGGTATAA    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    451 GCCTTATCTCTGTTTATCGGAACGGTTTTCTTCCATCTTTTCTGGTATAA    500

BSNT_00693___    501 AGGGAAATCAGAACAGTTCGTCAAACGGACGAGACGTATCCTGACCGGCT    550
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU03950___yc    501 AGGGAAATCAGAACAGCTCGTCAAACGGACGAGACGTATCCTGACCGGCT    550

BSNT_00693___    551 CGATCGCAGCATTGGGGCTGGCGCTTTTGCTTCAGCTTCCGATTCAGACA    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    551 CGATCGCAGCATTGGGGCTGGCGCTTTTGCTTCAGCTTCCGATTCAGACA    600

BSNT_00693___    601 AAAGCGAACGCAGGCGACGGCTGGGGCAGCGCATTCCAGCCGGGCTACAT    650
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU03950___yc    601 AAAGCGAACGCAGGCGGCGGCTGGGGCAGCGCATTCCAGCCGGGCTACAT    650

BSNT_00693___    651 CAGAGAAACACTGTTTGAGACAGCAGGCGGCTCCATTTGGATCATACAGG    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    651 CAGAGAAACACTGTTTGAGACAGCAGGCGGCTCCATTTGGATCATACAGG    700

BSNT_00693___    701 CCGCTCTGTTCGTGCTCCTCGCACTGTCTGTCATTCCTGCGATACGGAAA    750
                     |.||.|||||||||||.|||||||||||||||||.|||||||||||||||
BSU03950___yc    701 CTGCGCTGTTCGTGCTGCTCGCACTGTCTGTCATCCCTGCGATACGGAAA    750

BSNT_00693___    751 AACCGCTTTTCATCCTTTGGCTATTGGATAGCGCCGCTCATTTTCTTTTT    800
                     ||||||||||||||||||||||||||||.|||||||||||||||||||||
BSU03950___yc    751 AACCGCTTTTCATCCTTTGGCTATTGGACAGCGCCGCTCATTTTCTTTTT    800

BSNT_00693___    801 CGGTCTCCTGCTTGCCAAGGCGTTTACCGGGCATGCCGCTGTCGTTGAAG    850
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU03950___yc    801 CGGTCTCCTGCTTGCCAAGGCGTTTACCGGGCATGCTGCTGTCGTTGAAG    850

BSNT_00693___    851 AAAAAACGGTCGGCATTTTGATGGATTTCCTTCATTTAACTTCCGCTTCC    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    851 AAAAAACGGTCGGCATTTTGATGGATTTCCTTCATTTAACTTCCGCTTCC    900

BSNT_00693___    901 ATCTGGGTTGGCGGAATAGCGGCACTCGTTTTGCTGCTCTCAAAAGAATG    950
                     ||||||||.|||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    901 ATCTGGGTCGGCGGAATAGCGGCACTCGTTTTGCTGCTCTCAAAAGAATG    950

BSNT_00693___    951 GAGGCAGCCTGACAAAACGCTCGCGTGGGAGACGGTCAGACGGTTCTCCC   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc    951 GAGGCAGCCTGACAAAACGCTCGCGTGGGAGACGGTCAGACGGTTCTCCC   1000

BSNT_00693___   1001 CATGGGCGCTCACTGCAGTCGGCGTCATTTTGTTTTCAGGCTTGCTCAAT   1050
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1001 CATGGGCGCTCACTGCAGTCGGCGTCATTTTGTTTTCAGGCTTGCTCAAT   1050

BSNT_00693___   1051 GGATTTTTCATCATTCGTTCAATGGATTCACTGTTCCATACAGCGTATGG   1100
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
BSU03950___yc   1051 GGATTTTTCATCATTCGTTCAATGGATTCACTGTTCCATACAGCGTACGG   1100

BSNT_00693___   1101 CCAAGCTCTTTTAGTGAAAAGCGGGCTGTTTGTTTTCATGCTGGTCTTAG   1150
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1101 ACAAGCTCTTTTAGTGAAAAGCGGGCTGTTTGTTTTCATGCTGGTCTTAG   1150

BSNT_00693___   1151 GCGCGATTCATTTTCTGCTTACCAGAAAGCAGCGCCGCACAGGAATCAGC   1200
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1151 GCGCAATTCATTTTCTGCTTACCAGAAAGCAGCGCCGCACAGGAATCAGC   1200

BSNT_00693___   1201 CGAACGTTGAAAGCGGAGTGGGCAATCGGCATCGCTGTATTGATCACAGC   1250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1201 CGAACGTTGAAAGCGGAGTGGGCAATCGGCATCGCTGTATTGATCACAGC   1250

BSNT_00693___   1251 GGCCGTGTTTACAAGCCTGCCAAGCCCGCCTGAGCCAGCGCCGGAACCGT   1300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1251 GGCCGTGTTTACAAGCCTGCCAAGCCCGCCTGAGCCAGCGCCGGAACCGT   1300

BSNT_00693___   1301 TCTACCAAACCAAAGCGATTGAGAACGGACAAAGCGTTTCTCTCAGCATC   1350
                     |||||||||||||||||||.||||||||||||||||||||||||||||||
BSU03950___yc   1301 TCTACCAAACCAAAGCGATAGAGAACGGACAAAGCGTTTCTCTCAGCATC   1350

BSNT_00693___   1351 AGCCCAAACCAGCCCGGAAAAAATGTTTTTGAGCTGCGTGTCACCGACCA   1400
                     ||||||||||||||.|||||||||||||||||||||||.|||||||||||
BSU03950___yc   1351 AGCCCAAACCAGCCTGGAAAAAATGTTTTTGAGCTGCGGGTCACCGACCA   1400

BSNT_00693___   1401 TAACGGAGATCCCGTGAAAAACATCCAGCAAATCACGTTAACCGTTTATA   1450
                     ||||||.|||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1401 TAACGGTGATCCCGTGAAAAACATCCAGCAAATCACGTTAACCGTTTATA   1450

BSNT_00693___   1451 AAACAGGTCTGTCAGGCAGCGAAAACAAAAGCACCTTTACATTAAAAGAA   1500
                     |||||||.||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1451 AAACAGGCCTGTCAGGCAGCGAAAACAAAAGCACCTTTACATTAAAAGAA   1500

BSNT_00693___   1501 AAAACAAAAGGCGTCTTCCAGGATCAAAACCTGTCGATTAATGAAAAAGG   1550
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
BSU03950___yc   1501 AAAACAAAAGGCGTCTTCCAAGATCAAAACCTGTCGATTAATGAAAAAGG   1550

BSNT_00693___   1551 AAACTGGAAGATCAAAGTCCACGGCCTGACCGGCGACTTTAACGAAATCA   1600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03950___yc   1551 AAACTGGAAGATCAAAGTCCACGGCCTGACCGGCGACTTTAACGAAATCA   1600

BSNT_00693___   1601 ATATCATGTTTACAAAGACCAATTAA   1626
                     ||||||||||||||||||||||||||
BSU03950___yc   1601 ATATCATGTTTACAAAGACCAATTAA   1626


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