Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00840 and BSU04870

See Amino acid alignment / Visit BSNT_00840 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:16
# Commandline: needle
#    -asequence dna-align/BSNT_00840___ydcR.1.22522.seq
#    -bsequence dna-align/BSU04870___ydcR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00840___ydcR-BSU04870___ydcR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00840___ydcR-BSU04870___ydcR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00840___ydcR
# 2: BSU04870___ydcR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1059
# Identity:    1026/1059 (96.9%)
# Similarity:  1026/1059 (96.9%)
# Gaps:           0/1059 ( 0.0%)
# Score: 4998.0
# 
#
#=======================================

BSNT_00840___      1 ATGGATGAGCTAAAACACCCCCCCCACGCTAACAGGGGGGTAGTAATCGT     50
                     |||||||||||||||||.||||||||||||||||||||||||||||||||
BSU04870___yd      1 ATGGATGAGCTAAAACAACCCCCCCACGCTAACAGGGGGGTAGTAATCGT     50

BSNT_00840___     51 AAAAGAAGAGAATGAAACCGTTGAAAGTCCTTTAGTATCAATGGTTGACT    100
                     |||||||.|.||||||.||||||||||||||||.||||||||||||||||
BSU04870___yd     51 AAAAGAAAAAAATGAAGCCGTTGAAAGTCCTTTGGTATCAATGGTTGACT    100

BSNT_00840___    101 ATATTCGAGTCTCTTTTAAAACTCATGATGTTGACAGAATTATTGAAGAG    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    101 ATATTCGAGTCTCTTTTAAAACTCATGATGTTGACAGAATTATTGAAGAG    150

BSNT_00840___    151 GTTCTTCATCTTAGCAAAGACTTTATGACTGAGAAACAATCTGGTTTCTA    200
                     ||||||||.|||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    151 GTTCTTCACCTTAGCAAAGACTTTATGACTGAGAAACAATCTGGTTTCTA    200

BSNT_00840___    201 TGGCTACGTTGGCACGTATGAACTGGACTATGTCAAAGTCTTTTATTCTG    250
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
BSU04870___yd    201 TGGCTACGTTGGCACGTATGAACTGGACTATATCAAAGTCTTTTATTCTG    250

BSNT_00840___    251 CGCCGGATGACAACAGAGGTGTTTTGATAGAAATGTCCGGTCAAGGTTGC    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    251 CGCCGGATGACAACAGAGGTGTTTTGATAGAAATGTCCGGTCAAGGTTGC    300

BSNT_00840___    301 CGTCAATTTGAATCCTTCTTGGAATGCCGGAAGAAAACATGGTACGACTT    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    301 CGTCAATTTGAATCCTTCTTGGAATGCCGGAAGAAAACATGGTACGACTT    350

BSNT_00840___    351 CTTTCAAGATTGCATGCAACAAGGCGGTTCGTTCACTCGCTTTGATTTAG    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    351 CTTTCAAGATTGCATGCAACAAGGCGGTTCGTTCACTCGCTTTGATTTAG    400

BSNT_00840___    401 CTATTGATGATAAAAAGACATACTTTTCTATACCGGAACTGTTAAAGAAA    450
                     ||||||||||||||||||||||||||||||||||.|||||||||||||||
BSU04870___yd    401 CTATTGATGATAAAAAGACATACTTTTCTATACCAGAACTGTTAAAGAAA    450

BSNT_00840___    451 GCCCAAAAGGGCGAATGCATTTCACGGTTTAGAAAATCGGATTTCAATGG    500
                     |||||||||||||||||.||||||||.|||||||||||.|||||||||||
BSU04870___yd    451 GCCCAAAAGGGCGAATGTATTTCACGATTTAGAAAATCTGATTTCAATGG    500

BSNT_00840___    501 CTCCTTAGGTCTATCTGATGGCATTACAGGCGGGACGACAATATATTTCG    550
                     ||||||.|.|||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    501 CTCCTTTGATCTATCTGATGGCATTACAGGCGGGACGACAATATATTTCG    550

BSNT_00840___    551 GTTCTAAAAAGTCAGAAGCGTACCTTTGCTTTTATGAGAAAAACTATGAA    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    551 GTTCTAAAAAGTCAGAAGCGTACCTTTGCTTTTATGAGAAAAACTATGAA    600

BSNT_00840___    601 CAAGCAGAAAAGTATAACATTCCGTTAGAAGAACTAGGCGATTGGAATCG    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    601 CAAGCAGAAAAGTATAACATTCCGTTAGAAGAACTAGGCGATTGGAATCG    650

BSNT_00840___    651 TTATGAATTGCGGCTTAAAAATGAACGTGCACAAGTGGCTATAGATGCTT    700
                     |||||||||||||||||||||||||||||||||||||||.||||||||||
BSU04870___yd    651 TTATGAATTGCGGCTTAAAAATGAACGTGCACAAGTGGCGATAGATGCTT    700

BSNT_00840___    701 TATTGAAAACAAAGGATTTAACCTTAATCGCTATGCAGATCATTAATAAC    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    701 TATTGAAAACAAAGGATTTAACCTTAATCGCTATGCAGATCATTAATAAC    750

BSNT_00840___    751 TATGTAAGGTTCGTTGATGCTGATGAAAACATCACTAGAGAGCATTGGAA    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd    751 TATGTAAGGTTCGTTGATGCTGATGAAAACATCACTAGAGAGCATTGGAA    800

BSNT_00840___    801 AACGAGCCTTTTTTGGTCTGAATTTATAGGTGATGTTGGAAAACTTCCTT    850
                     |||||||||||||||||||||.||||||||.||||||||.|.||||||||
BSU04870___yd    801 AACGAGCCTTTTTTGGTCTGATTTTATAGGCGATGTTGGGAGACTTCCTT    850

BSNT_00840___    851 TGTACGTCAAACCACAAAAAGACTTCTATCAAAAATCAAGAAACTGGCTT    900
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
BSU04870___yd    851 TGTACGTCAAACCACAAAAAGACTTCTATCAGAAATCAAGAAACTGGCTT    900

BSNT_00840___    901 CGTAACTCTTGTGCTCCCACTATGAAAATGGTGCTGGAAGCTGATCAGCA    950
                     |||||||||||||||||||||||||||||||||||.|||||||||.|.||
BSU04870___yd    901 CGTAACTCTTGTGCTCCCACTATGAAAATGGTGCTTGAAGCTGATGAACA    950

BSNT_00840___    951 CTTAGGGAAAACTGATCTGTCAGATATGATCGCAGAAGCTGAACTGGCGG   1000
                     .|||||||||||.|||||||||||||||||.|||||||||||||||||.|
BSU04870___yd    951 TTTAGGGAAAACCGATCTGTCAGATATGATTGCAGAAGCTGAACTGGCTG   1000

BSNT_00840___   1001 AAAAACATGAAAAAATGTTGAATGTGTTTATAGCTGATGTTGCTGACATG   1050
                     |.||||||.||||||||||..||||||.|||.||||||||||||||||||
BSU04870___yd   1001 ACAAACATAAAAAAATGTTAGATGTGTATATGGCTGATGTTGCTGACATG   1050

BSNT_00840___   1051 GTGGTTTAA   1059
                     ||.||||||
BSU04870___yd   1051 GTCGTTTAA   1059


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