Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00987 and BSU05730

See Amino acid alignment / Visit BSNT_00987 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:29
# Commandline: needle
#    -asequence dna-align/BSNT_00987___ydhF.1.22522.seq
#    -bsequence dna-align/BSU05730___ydhF.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00987___ydhF-BSU05730___ydhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00987___ydhF-BSU05730___ydhF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00987___ydhF
# 2: BSU05730___ydhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 753
# Identity:     706/753 (93.8%)
# Similarity:   706/753 (93.8%)
# Gaps:          42/753 ( 5.6%)
# Score: 3510.0
# 
#
#=======================================

BSNT_00987___      1 TTGTATGAAGTAACGGGATCTCTTTTTAATGGAGGAATCATCATGAGAAG     50
                                                               ||||||||
BSU05730___yd      1 ------------------------------------------ATGAGAAG      8

BSNT_00987___     51 AATTCTTTCAATTTTCGTTTTTGCTATCATGCTTGCGGGCTGCTCATCAA    100
                     |||||||||||||.||||||||||||||||||||||||||||||||||||
BSU05730___yd      9 AATTCTTTCAATTCTCGTTTTTGCTATCATGCTTGCGGGCTGCTCATCAA     58

BSNT_00987___    101 ACGCCAGTACTGAAAAACAGCATGCAGGCGGGGAGAAAACAGTAAAAGCT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd     59 ACGCCAGTACTGAAAAACAGCATGCAGGCGGGGAGAAAACAGTAAAAGCT    108

BSNT_00987___    151 GAGCCGCAAAGCACTTCATCCCAGAAGGACAGCACAGATGATTATCAGCC    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    109 GAGCCGCAAAGCACTTCATCCCAGAAGGACAGCACAGATGATTATCAGCC    158

BSNT_00987___    201 TAATTCCCAGGTAACTGATGACCGGTCATTGCATAAGGTCGGCCAAACGT    250
                     |||||||||||||||||||||||||.||||||||||||||||||||||||
BSU05730___yd    159 TAATTCCCAGGTAACTGATGACCGGACATTGCATAAGGTCGGCCAAACGT    208

BSNT_00987___    251 TTTCAGATGATAAAGGAAAAGCTGTCTTAAAAGATATCAAACAAGTGAAC    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    209 TTTCAGATGATAAAGGAAAAGCTGTCTTAAAAGATATCAAACAAGTGAAC    258

BSNT_00987___    301 AAAACCTATAAAATTGGCGACGTGGAGTTAACAGTAAAAGAAATGAAGCT    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    259 AAAACCTATAAAATTGGCGACGTGGAGTTAACAGTAAAAGAAATGAAGCT    308

BSNT_00987___    351 GATCCACTTGCGCCCGGACTACAGCATGATTGATTACTTTCATGAGTTAA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    309 GATCCACTTGCGCCCGGACTACAGCATGATTGATTACTTTCATGAGTTAA    358

BSNT_00987___    401 CACATGATGAAGAGTTTGATTTCGTTAAGGTTTTCGTTGATATCAAGAAC    450
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    359 CACACGATGAAGAGTTTGATTTCGTTAAGGTTTTCGTTGATATCAAGAAC    408

BSNT_00987___    451 ACCTCTACAAAAAAAGTAAATGTTGCGCCGATTGCATTGATGAAAACAAA    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    409 ACCTCTACAAAAAAAGTAAATGTTGCGCCGATTGCATTGATGAAAACAAA    458

BSNT_00987___    501 TACGGGTGAAACCTTTGATTGGAACAAAGATATTTATCTTGAAGAGTTAA    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    459 TACGGGTGAAACCTTTGATTGGAACAAAGATATTTATCTTGAAGAGTTAA    508

BSNT_00987___    551 ACGGCGAATTGGAAGGCGGCGCCGAAAAGTCCGGAAATCTCGGCTTTATT    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    509 ACGGCGAATTGGAAGGCGGCGCCGAAAAGTCCGGAAATCTCGGCTTTATT    558

BSNT_00987___    601 GTGAACGCATCAAGCGGCCATGCTCATGATAAGGCCGCGGATGCTGAGAA    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    559 GTGAACGCATCAAGCGGCCATGCTCATGATAAGGCCGCGGATGCTGAGAA    608

BSNT_00987___    651 GAAAACAAAAAAGATCGAGTGGATCGAAATCACGACAAGTGACGTCTTTG    700
                     ||||||||||.|||||.|||||||||||||||||||||||||||||||||
BSU05730___yd    609 GAAAACAAAAGAGATCAAGTGGATCGAAATCACGACAAGTGACGTCTTTG    658

BSNT_00987___    701 ACCATAACCATAAGAAAATCAGTGATGCTCAAAAAATCAAAATCAAGTTT    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05730___yd    659 ACCATAACCATAAGAAAATCAGTGATGCTCAAAAAATCAAAATCAAGTTT    708

BSNT_00987___    751 TAA    753
                     |||
BSU05730___yd    709 TAA    711


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