Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01877 and BSU11180

See Amino acid alignment / Visit BSNT_01877 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:19:10
# Commandline: needle
#    -asequence dna-align/BSNT_01877.1.22522.seq
#    -bsequence dna-align/BSU11180___yitZ.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01877-BSU11180___yitZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01877-BSU11180___yitZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01877
# 2: BSU11180___yitZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 541
# Identity:     309/541 (57.1%)
# Similarity:   309/541 (57.1%)
# Gaps:         230/541 (42.5%)
# Score: 1527.0
# 
#
#=======================================

BSNT_01877         1 ATGGGGAAAAACAAATTAAAATGGCTGACATTATCACAAAGCAGCGTGTT     50
                                                                  |||||
BSU11180___yi      1 ---------------------------------------------GTGTT      5

BSNT_01877        51 TTTCGCAAGCAGCTTAATCTTTCCGTTTTATATTCTGTTTGTGAAAAATA    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU11180___yi      6 TTTCGCAAGCAGCTTAATCTTTCCGTTTTATATTCTGTTTGTGAAAAATA     55

BSNT_01877       101 TCGGCTCAAGCTACACACAGTTCGGTTTTTCCTACGGATTGTTCGGGTTG    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU11180___yi     56 TCGGCTCAAGCTACACACAGTTCGGTTTTTCCTACGGATTGTTCGGGTTG    105

BSNT_01877       151 AGCGGAGCGCTCATTTACCCGCTCCTCGGACGGCTGTCTGAAAGGTTTGA    200
                     |||||||||||.||||||||||||||||||||||||||||||||||||||
BSU11180___yi    106 AGCGGAGCGCTTATTTACCCGCTCCTCGGACGGCTGTCTGAAAGGTTTGA    155

BSNT_01877       201 CAGCCGTTATTTTCTGCTTCTGAACTCGTGGGGGATGGCTGTTCTGCTTT    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU11180___yi    156 CAGCCGTTATTTTCTGCTTCTGAACTCGTGGGGGATGGCTGTTCTGCTTT    205

BSNT_01877       251 TATATGTCCCGCATATTGGAAGCGTCGTTCAAGTGTATATCGTCCAAGTG    300
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU11180___yi    206 TATATGTCCCGCATATCGGAAGCGTCGTTCAAGTGTATATCGTCCAAGTG    255

BSNT_01877       301 CTGTTAGGGCTCTTTGGAGCGATGCAAAAGCATGGAGAAAAAAGTGCTGA    350
                     ||||||||||||||||||||||||||||||||||||| ||||||||||||
BSU11180___yi    256 CTGTTAGGGCTCTTTGGAGCGATGCAAAAGCATGGAG-AAAAAGTGCTGA    304

BSNT_01877       351 TCGCTAA-------------------------------------------    357
                     |||||||                                           
BSU11180___yi    305 TCGCTAATTTTACAGACAGTGGAGAGCGTGGAAAGAAGATCGGGAATTAC    354

BSNT_01877       357 --------------------------------------------------    357
                                                                       
BSU11180___yi    355 CATTTTTGGACAGCTGTCTTTTCAGCAGCAGCCATTATGCTCGGGGGCTT    404

BSNT_01877       357 --------------------------------------------------    357
                                                                       
BSU11180___yi    405 TCTCGCTGACTTTTTCACAGTGCAAATGATTTTTTATGCAAGCTCTATTC    454

BSNT_01877       357 -----------------------------------------    357
                                                              
BSU11180___yi    455 TATATTTTTTGAGTGGATTGATGATGATGAAAACAGGCTGA    495


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