Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01964 and BSU11760

See Amino acid alignment / Visit BSNT_01964 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:19:20
# Commandline: needle
#    -asequence dna-align/BSNT_01964___cotX.1.22522.seq
#    -bsequence dna-align/BSU11760___cotX.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01964___cotX-BSU11760___cotX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01964___cotX-BSU11760___cotX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01964___cotX
# 2: BSU11760___cotX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 564
# Identity:     329/564 (58.3%)
# Similarity:   329/564 (58.3%)
# Gaps:         126/564 (22.3%)
# Score: 851.5
# 
#
#=======================================

BSNT_01964___      1 ATGGAATCAAGACCTTACTCATGGGTTGCCCTAGATAATTCATGT-ACAC     49
                     ||||||...|||||.||.||.||||||||.||.|||..|...||| || |
BSU11760___co      1 ATGGAAAGCAGACCATATTCTTGGGTTGCACTTGATCCTGACTGTGAC-C     49

BSNT_01964___     50 ACCCG---GGT-----AGCG---GCTATA----------AAAGAGAAGCG     78
                     |.|||   |.|     ||.|   |.||.|          |||||.||   
BSU11760___co     50 ATCCGTTAGATGACAAAGAGAAAGATAAAGAAAAACACGAAAGAAAA---     96

BSNT_01964___     79 GTTTGTCAT---GACGTTTGTTCTGGAGGAGAAGATGCT-----------    114
                        ||||||   ||||||||  |||.|...|.| |||.|           
BSU11760___co     97 ---TGTCATTGCGACGTTTG--CTGTAATGGCA-ATGGTTTTTTTGGCAA    140

BSNT_01964___    115 ----AACGCATT------TCAAGATTTTGATCAGCT-AAGC----CTTAA    149
                         |||||.||      .||||||.|     |||| ||||    ||.||
BSU11760___co    141 CGACAACGCCTTCATCGACCAAGATCT-----AGCTCAAGCAAATCTCAA    185

BSNT_01964___    150 CAAACAAACATCTGAAGAAATGATTATCGTTAGAGATTCTTGCGACATTG    199
                     |||||||...||.||.||||.||||||..|||||||||||||.|||||..
BSU11760___co    186 CAAACAAGTTTCAGATGAAACGATTATTATTAGAGATTCTTGTGACATCA    235

BSNT_01964___    200 ATGTTACGTCTACTGACACTCAAGTTGCTGCATCCATTCAAGCCGCCCTC    249
                     |||||||.|||||.|||..|||||..|...||||..||..|.|.||.||.
BSU11760___co    236 ATGTTACATCTACAGACGTTCAAGCCGTAACATCAGTTGTAACAGCACTT    285

BSNT_01964___    250 CAAACTGCTGTCATTACAATTGTAAACT----TATCAATAGCAGACG--G    293
                     .|..|.||||||.|.||    |..||||    .||||||.|||||||  |
BSU11760___co    286 AATGCCGCTGTCGTAAC----GGCAACTCTGACATCAATTGCAGACGGCG    331

BSNT_01964___    294 TGATTTAGCAGATCAAGTCATCCAAGACTTAGTGCA----ACAATCTGTT    339
                     |.|||  ||.||...||||...|||||.||..|.||    |||    |.|
BSU11760___co    332 TAATT--GCCGAATTAGTCGCACAAGATTTGTTACAGCTTACA----GCT    375

BSNT_01964___    340 AACAAGC-AGTCAAACCGTCAAAAACTAGTGATTGAAAACTCTAGAAATG    388
                     |||||.| ||| ||||||.||||||||..|.||.|           ||||
BSU11760___co    376 AACAAACAAGT-AAACCGCCAAAAACTTCTCATCG-----------AATG    413

BSNT_01964___    389 TT-----------AATGTCACAACAACCGATACAGATATTGCA----CTA    423
                     ||           ||.|||||||||...|||.|.|||||.|||    .||
BSU11760___co    414 TTCCCGCGGCGTAAACGTCACAACAGTAGATGCCGATATCGCAACCCTTA    463

BSNT_01964___    424 TCGATCCA-AACACTGACACAGACACTTGCCGCTA---CAATTATCGCAG    469
                     |  .||.| |.||   |||.|.|||||.|..||.|   .|.|||||.|..
BSU11760___co    464 T--TTCTACAGCA---ACAAATACACTCGTAGCCATCCTAGTTATCACTC    508

BSNT_01964___    470 TTGGAATCCTCTAA    483
                     |||   |||||||.
BSU11760___co    509 TTG---TCCTCTAG    519


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