Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02107 and BSU12430

See Amino acid alignment / Visit BSNT_02107 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:19:31
# Commandline: needle
#    -asequence dna-align/BSNT_02107___rapA.1.22522.seq
#    -bsequence dna-align/BSU12430___rapA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02107___rapA-BSU12430___rapA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02107___rapA-BSU12430___rapA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02107___rapA
# 2: BSU12430___rapA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1137
# Identity:    1123/1137 (98.8%)
# Similarity:  1123/1137 (98.8%)
# Gaps:           6/1137 ( 0.5%)
# Score: 5583.0
# 
#
#=======================================

BSNT_02107___      1 ------ATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAA     44
                           ||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra      1 TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAA     50

BSNT_02107___     45 TGAATGGTATACTCATATCCGGCAGTTCCACGTCGCTGAAGCCGAACGGG     94
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra     51 TGAATGGTATACTCATATCCGGCAGTTCCACGTCGCTGAAGCCGAACGGG    100

BSNT_02107___     95 TCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGAT    144
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    101 TCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGAT    150

BSNT_02107___    145 TTGCTGCTGTATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGA    194
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
BSU12430___ra    151 TTGCTGCTGTATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGA    200

BSNT_02107___    195 TTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAGTTTTCAGAAT    244
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    201 TTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAGTTTTCAGAAT    250

BSNT_02107___    245 TATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAA    294
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    251 TGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAA    300

BSNT_02107___    295 TATTACTTTAATTTTTTTCGAGGAATGTATGAATTTAAGCAGAAGATGTT    344
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    301 TATTACTTTAATTTTTTTCGAGGAATGTATGAATTTAAGCAGAAGATGTT    350

BSNT_02107___    345 TGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG    394
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    351 TGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG    400

BSNT_02107___    395 TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATT    444
                     ||||||||||||||||||||||.|||||||||||||||||||||||||||
BSU12430___ra    401 TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATT    450

BSNT_02107___    445 TTTTACAATTTAAAACAAACCTATGTTTCGATGAGCTACGCCGTTCAGGC    494
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    451 TTTTACAATTTAAAACAAACCTATGTTTCGATGAGCTACGCCGTTCAGGC    500

BSNT_02107___    495 ATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAAT    544
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    501 ATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAAT    550

BSNT_02107___    545 GTGAATTCGTTATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGA    594
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    551 GTGAATTCGTTATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGA    600

BSNT_02107___    595 GCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGAAGGAAGGCAA    644
                     |||||||||||||||||||||||||||||||||||||||||.||||||||
BSU12430___ra    601 GCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGAAAGAAGGCAA    650

BSNT_02107___    645 TCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGA    694
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU12430___ra    651 TCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGA    700

BSNT_02107___    695 AAATGGGTGAACTGCAAAAGGCAGCCGAATACTTTGAGAAATCTGTTTCT    744
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU12430___ra    701 AAATGGGTGAACTGCAAAAGGCAGCCGAATACTTTGGGAAATCTGTTTCT    750

BSNT_02107___    745 ATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT    794
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    751 ATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT    800

BSNT_02107___    795 AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGT    844
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    801 AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGT    850

BSNT_02107___    845 ATCGTGAAGGATTGGAAATCGCCCGTCAATACAGTGATGAATTATTCGTG    894
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BSU12430___ra    851 ATCGTGAAGGATTGGAAATCGCCCGTCAATACAGTGATGAATTATTTGTG    900

BSNT_02107___    895 GAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGA    944
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    901 GAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGA    950

BSNT_02107___    945 ATCGGTCTCACACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTT    994
                     |||.||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra    951 ATCAGTCTCACACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTT   1000

BSNT_02107___    995 ATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATATAGAAAACGGA   1044
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra   1001 ATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATATAGAAAACGGA   1050

BSNT_02107___   1045 CAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAA   1094
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12430___ra   1051 CAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAA   1100

BSNT_02107___   1095 ACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAA   1131
                     |||||||||||||||||||||||||||||||||||||
BSU12430___ra   1101 ACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAA   1137


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