Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02110 and BSU12450

See Amino acid alignment / Visit BSNT_02110 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:19:32
# Commandline: needle
#    -asequence dna-align/BSNT_02110.1.22522.seq
#    -bsequence dna-align/BSU12450___yjpA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02110-BSU12450___yjpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02110-BSU12450___yjpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02110
# 2: BSU12450___yjpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 258
# Identity:     210/258 (81.4%)
# Similarity:   210/258 (81.4%)
# Gaps:          45/258 (17.4%)
# Score: 1023.0
# 
#
#=======================================

BSNT_02110         1 ATGTATACATATTTAATGCTGACAATGAGAACGGAGAAATTTAATCAGGA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12450___yj      1 ATGTATACATATTTAATGCTGACAATGAGAACGGAGAAATTTAATCAGGA     50

BSNT_02110        51 GCATGTGGCTGGGCACTATGAATTTCTGGATCGTTTACAAGCAGAAAAAC    100
                     |||||||||||||||||||||||||||||||||||||||.||||||||||
BSU12450___yj     51 GCATGTGGCTGGGCACTATGAATTTCTGGATCGTTTACAGGCAGAAAAAC    100

BSNT_02110       101 GATTAAAAATGTTTGGGCCATTCAGCGACGCCACAGGCGGAGCGTATGTC    150
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
BSU12450___yj    101 GTTTAAAAATGTTTGGGCCATTCAGCGACGCCACAGGCGGAGCGTATGTC    150

BSNT_02110       151 ATCGAAGCAGATTCACTGAAAGAG-----------CGGCCATGCGGATCC    189
                     ||||||||||||||||||.|||||           |||||||||||||||
BSU12450___yj    151 ATCGAAGCAGATTCACTGGAAGAGGCAGCGGAAATCGGCCATGCGGATCC    200

BSNT_02110       190 GCTGGTGGCAAGTGGATCTTCTGA--------------------------    213
                     ||||||||||||||||||||||||                          
BSU12450___yj    201 GCTGGTGGCAAGTGGATCTTCTGAGCTGACGATAAAAGAATGGAAGCTGA    250

BSNT_02110       213 --------    213
                             
BSU12450___yj    251 AGAAATAA    258


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