Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02340 and BSU13980

See Amino acid alignment / Visit BSNT_02340 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:01
# Commandline: needle
#    -asequence dna-align/BSNT_02340___ykuA.1.22522.seq
#    -bsequence dna-align/BSU13980___pbpH.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02340___ykuA-BSU13980___pbpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02340___ykuA-BSU13980___pbpH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02340___ykuA
# 2: BSU13980___pbpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2127
# Identity:    1941/2127 (91.3%)
# Similarity:  1941/2127 (91.3%)
# Gaps:          75/2127 ( 3.5%)
# Score: 9214.0
# 
#
#=======================================

BSNT_02340___      1 GTGACTGAAATAGGACGTGAACCAAAGAAAAAGAGCAAAGGAAACAGAGC     50
                                                                       
BSU13980___pb      0 --------------------------------------------------      0

BSNT_02340___     51 AATCAGAATGAACCTTTTTTTCCTAGCTGTCTTTGTTCTATTCACTGCAT    100
                            |||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb      1 -------ATGAACCTTTTTTTCCTAGCTGTCTTTGTTCTATTCACTGCAT     43

BSNT_02340___    101 TAATTTTTAAGCTCGGGGTTGTTCAAATTGTTGAAGGCGAACAGCATGAA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb     44 TAATTTTTAAGCTCGGGGTTGTTCAAATTGTTGAAGGCGAACAGCATGAA     93

BSNT_02340___    151 GAAGACGCTGAGAAATCAAATGCAAAAACAGCTTACTATCCTGCGCCTCG    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb     94 GAAGACGCTGAGAAATCAAATGCAAAAACAGCTTACTATCCTGCGCCTCG    143

BSNT_02340___    201 CGGGAAGATGTACGACAGAAATCAGAAAGTTGCTGTCGACAACCAGAGCG    250
                     |||||||||||||||||||||.||||||||||||||||||||||||||||
BSU13980___pb    144 CGGGAAGATGTACGACAGAAACCAGAAAGTTGCTGTCGACAACCAGAGCG    193

BSNT_02340___    251 TTCCAGAAATTGTGTATGTATCAACATCTAGCACAAAAACAGAAGATAAA    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    194 TTCCAGAAATTGTGTATGTATCAACATCTAGCACAAAAACAGAAGATAAA    243

BSNT_02340___    301 ATCAAAACAGCGAAGCGGCTTGCTTCTTTCATTCATATTGATACCGAATT    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    244 ATCAAAACAGCGAAGCGGCTTGCTTCTTTCATTCATATTGATACCGAATT    293

BSNT_02340___    351 TTTGAAGGAAAGGGATCTTCGTGATTACTGGATCGCAGCTCATCCGAAAA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    294 TTTGAAGGAAAGGGATCTTCGTGATTACTGGATCGCAGCTCATCCGAAAA    343

BSNT_02340___    401 AAGCCGCCGCTCTGCTTAAGGAATCAGAAAGCAATCTGAAAGGAGACCAG    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    344 AAGCCGCCGCTCTGCTTAAGGAATCAGAAAGCAATCTGAAAGGAGACCAG    393

BSNT_02340___    451 GCTTACAAGCTTCAAATAGAGCGTGTTCCGGATCAAGAATTAAAGGCTAT    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    394 GCTTACAAGCTTCAAATAGAGCGTGTTCCGGATCAAGAATTAAAGGCTAT    443

BSNT_02340___    501 TCAGCAAGATGACGAAGAAATGGAAACTGCTGCGATATATACAAGGTTTT    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    444 TCAGCAAGATGACGAAGAAATGGAAACTGCTGCGATATATACAAGGTTTT    493

BSNT_02340___    551 CAAGCGGAAATGCTTACGAACCTCAAATCGTAAAGGCAATGAATCCAAAT    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    494 CAAGCGGAAATGCTTACGAACCTCAAATCGTAAAGGCAATGAATCCAAAT    543

BSNT_02340___    601 AAGAGCAATAGCAATGGAAAAAACGGAGCGCTGCTTGATGAGAAGAAAAA    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    544 AAGAGCAATAGCAATGGAAAAAACGGAGCGCTGCTTGATGAGAAGAAAAA    593

BSNT_02340___    651 CTCCTCGCAAAGACCAAAAAATGACTTAACATATGATGAAATTTCCATTG    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    594 CTCCTCGCAAAGACCAAAAAATGACTTAACATATGATGAAATTTCCATTG    643

BSNT_02340___    701 TTTCTGAGCATTTAGAAGAACTTCCGGGAATCGATATCGTAAACGATTGG    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    644 TTTCTGAGCATTTAGAAGAACTTCCGGGAATCGATATCGTAAACGATTGG    693

BSNT_02340___    751 ACACGAAAATATCCTTATGACAAAACCCTTTATTCTGTTTTCGGGGGCGT    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    694 ACACGAAAATATCCTTATGACAAAACCCTTTATTCTGTTTTCGGGGGCGT    743

BSNT_02340___    801 CACGACACCTGATCAGGGCCTGCTGAGCGACCGGAAAGATTTCTACTTAA    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    744 CACGACACCTGATCAGGGCCTGCTGAGCGACCGGAAAGATTTCTACTTAA    793

BSNT_02340___    851 CAAGAGGCTATGCGAATAATGACAGGGTGGGAAAAAGTTATTTAGAGTAT    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    794 CAAGAGGCTATGCGAATAATGACAGGGTGGGAAAAAGTTATTTAGAGTAT    843

BSNT_02340___    901 CAATATGAAGAATATTTAAATTCGCATAAAGAAAAAGTGGAATACGTAGA    950
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    844 CAATATGAAGAATATTTAAATTCGCATAAAGAAAAAGTGGAATACGTAGA    893

BSNT_02340___    951 AGATAATAAAGGAAATGTCGTCAGCCAAAAAACCATTGATAAGGGCAGCA   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    894 AGATAATAAAGGAAATGTCGTCAGCCAAAAAACCATTGATAAGGGCAGCA    943

BSNT_02340___   1001 GGGGATACGATCTTCAGCTTTCTTTTGACATGGAGCTTCAGGCAAAGGTA   1050
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    944 GGGGATACGATCTTCAGCTTTCTTTTGACATGGAGCTTCAGGCAAAGGTA    993

BSNT_02340___   1051 GAAAAGATCATTGAAGAAGAAGTAAGAAACAGCCGTGCACGCGGAAATTA   1100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb    994 GAAAAGATCATTGAAGAAGAAGTAAGAAACAGCCGTGCACGCGGAAATTA   1043

BSNT_02340___   1101 CATGCTTGACAGAGCCTTTGCCGTAATGATGGACCCGAATAACGGCGATA   1150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb   1044 CATGCTTGACAGAGCCTTTGCCGTAATGATGGACCCGAATAACGGCGATA   1093

BSNT_02340___   1151 TTTTATCAATGGCAGGGAAAAAGATAGATTTAAAAACCAACAAAATTGAA   1200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb   1094 TTTTATCAATGGCAGGGAAAAAGATAGATTTAAAAACCAACAAAATTGAA   1143

BSNT_02340___   1201 GATTATGCGATAGGGGCATTTACCACCCAATATGAAATGGGATCAGCAGT   1250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb   1144 GATTATGCGATAGGGGCATTTACCACCCAATATGAAATGGGATCAGCAGT   1193

BSNT_02340___   1251 AAAGGGGGCCACCGTGCTAGCCGGCTATCAGGACGGAATCCCGCATTATA   1300
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU13980___pb   1194 AAAGGGGGCCACCGTGCTAGCCGGCTATCAGGACGGGATCCCGCATTATA   1243

BSNT_02340___   1301 AATATTTTGTTGATACACCTCTTTATTTAGCAGGATACGGTAACAAACC-   1349
                     ||||||.|.|.|||.|.||..|...||||          |.|||.||.| 
BSU13980___pb   1244 AATATTATATCGATGCTCCAATGCTTTTA----------GGAACGAATCT   1283

BSNT_02340___   1350 ---GAAGAAATCCTACATGAACATGGGAACCATCAATGAATTAACCGCTC   1396
                        .||.|||||.||.|..||.||||||||||||||||||||||||||..
BSU13980___pb   1284 TATAAAAAAATCTTATACTAATATGGGAACCATCAATGAATTAACCGCAT   1333

BSNT_02340___   1397 TGCAAAAAAGTTCAAACGTATATATGTTTAATGTTGCCATGCACATTGCC   1446
                     ||||||||||||||||||||||||||||.||||||||||||||.|||||.
BSU13980___pb   1334 TGCAAAAAAGTTCAAACGTATATATGTTCAATGTTGCCATGCATATTGCA   1383

BSNT_02340___   1447 GGTGTCACATACAAGCCGCATGGACCTCTTCCTGCTGACCAGAAGGATTT   1496
                     ||.||.||||||||||||||||||.||||.||.|||||.|||||.|||.|
BSU13980___pb   1384 GGCGTAACATACAAGCCGCATGGATCTCTCCCGGCTGATCAGAACGATCT   1433

BSNT_02340___   1497 AAACAAAATGAGAAATTACTACAGCCAATTTGGCCTGGGAGTAAAGACAG   1546
                     |...|||||||||||.||.||||||||.|||||.||||||||||||||||
BSU13980___pb   1434 ACTGAAAATGAGAAACTATTACAGCCAGTTTGGTCTGGGAGTAAAGACAG   1483

BSNT_02340___   1547 GTATCGATCTTCCGCAGGAATCAGCCGGAATGCAAACTACACCTGATGCG   1596
                     ||||.|||||.||||||||||||||||||||||||||.||||||.|..|.
BSU13980___pb   1484 GTATTGATCTCCCGCAGGAATCAGCCGGAATGCAAACCACACCTAAAACT   1533

BSNT_02340___   1597 GTAGGGGGGTTAATTTTAGACTTGGCCATTGGACAATACGATACATATAC   1646
                     |||||.||.||||||||||||||.||.|||||.||||||||||||||.||
BSU13980___pb   1534 GTAGGAGGATTAATTTTAGACTTAGCAATTGGCCAATACGATACATACAC   1583

BSNT_02340___   1647 ACCGCTTCAAATGGCACAGTACATCTCATCAATTGCCAATGGGGGGTACC   1696
                     |||||||||||||||.||.|||||||||..|||.||||||||.||.||.|
BSU13980___pb   1584 ACCGCTTCAAATGGCTCAATACATCTCAGTAATCGCCAATGGTGGCTATC   1633

BSNT_02340___   1697 GCATTCAGCCAAGAATTGTTACAAGTGTTCATGAGCCCAGCAAAAAAGA-   1745
                     |..|||||||.|||||.||.||||||.|||||.||||..|.|||||||| 
BSU13980___pb   1634 GTGTTCAGCCTAGAATCGTCACAAGTATTCATAAGCCAGGAAAAAAAGAC   1683

BSNT_02340___   1746 -AGGCCTTGGGAAGACCATTGAACAAAGAAAGCCAAACATTCTCAACAAA   1794
                      ||  ||.||.|||.|.||||||||.||.||.||.||..|.|||||.||.
BSU13980___pb   1684 CAG--CTGGGTAAGGCGATTGAACATAGGAAACCTAAAGTACTCAATAAG   1731

BSNT_02340___   1795 ATTAACAACTCAGAAAGTGACATTCAGCAGGTGAAGACTGGAATGAAGCT   1844
                     |||||.||.|||||.||.||..|..|.||.||..|.||.||.|||||..|
BSU13980___pb   1732 ATTAATAATTCAGAGAGCGATTTGAAACAAGTACAAACAGGCATGAAATT   1781

BSNT_02340___   1845 AGTTACCACTTCAGGGACAGCTAAAAATACGTTTACAGAAGATGTATCAG   1894
                     |||.||..|||||||||||||.||||||||||||||||||||||||||||
BSU13980___pb   1782 AGTCACTTCTTCAGGGACAGCAAAAAATACGTTTACAGAAGATGTATCAG   1831

BSNT_02340___   1895 GGAAAACGGGAACAGCGGAAACATTTTACTACGGCACGAATCGCAACTGG   1944
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb   1832 GGAAAACGGGAACAGCGGAAACATTTTACTACGGCACGAATCGCAACTGG   1881

BSNT_02340___   1945 TGGGGGAAAAAAACATACAATCTGACTTTTGTCGGCTATTACCCATCGAA   1994
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
BSU13980___pb   1882 TGGGGGAAAAAAACATACAATCTGACTTTTGTCGGCTATTACCCGTCGAA   1931

BSNT_02340___   1995 AAATCCAAAAGTGGCTTTTAGTGTTGTTGTTCCATCAGTAAATGATGATG   2044
                     |||.|||||||||||.||||||||||||||||||||||||.|||||||||
BSU13980___pb   1932 AAAACCAAAAGTGGCCTTTAGTGTTGTTGTTCCATCAGTAGATGATGATG   1981

BSNT_02340___   2045 ATAAGATCAATAAAATTATTGCCAAAAGAGCTATCCACGCCTACGCAGAG   2094
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13980___pb   1982 ATAAGATCAATAAAATTATTGCCAAAAGAGCTATCCACGCCTACGCAGAG   2031

BSNT_02340___   2095 CTCGAAAAAAAACACAGTAAAAAATAA   2121
                     |||||||||||||||||||||||||||
BSU13980___pb   2032 CTCGAAAAAAAACACAGTAAAAAATAA   2058


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