Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02876 and BSU17480

See Amino acid alignment / Visit BSNT_02876 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:11
# Commandline: needle
#    -asequence dna-align/BSNT_02876.1.22522.seq
#    -bsequence dna-align/BSU17480___ynzF.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02876-BSU17480___ynzF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02876-BSU17480___ynzF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02876
# 2: BSU17480___ynzF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity:     259/530 (48.9%)
# Similarity:   259/530 (48.9%)
# Gaps:         223/530 (42.1%)
# Score: 638.5
# 
#
#=======================================

BSNT_02876         1 GTGTGGAAAGCTTTAAGTCAATTACTCAAGAAACAGAAAAATCAAAGTCC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17480___yn      1 GTGTGGAAAGCTTTAAGTCAATTACTCAAGAAACAGAAAAATCAAAGTCC     50

BSNT_02876        51 ACTCGATGAGGGTTATATACAGATTCCAGAAAAGGATATAAATCAAGAAT    100
                     |..||||||.|.|||||||||||||||||||            ..||||.
BSU17480___yn     51 AAGCGATGAAGATTATATACAGATTCCAGAA------------TTAGAAG     88

BSNT_02876       101 TAAAGCAAGTGATATTTG------------AGT-----TGGAGAGCCTGG    133
                     |||   ||||    ||||            |||     |..||| |||||
BSU17480___yn     89 TAA---AAGT----TTTGGGGATGCTTCACAGTATCAATATAGA-CCTGG    130

BSNT_02876       134 GGGAAGTAGTATCGAAAAAGCTGCAGAATAAGTATGCAGGTGTTTTTGAA    183
                     ...|.|||.||.|..||     |||||| ||||.| .|||.||||.|   
BSU17480___yn    131 TTAATGTAATAGCCCAA-----GCAGAA-AAGTCT-AAGGAGTTTAT---    170

BSNT_02876       184 GCTCAGGATAAACCAAATCTCA-GCATCAAAGTTTGTAGAGACATAGATG    232
                         ||||     ||||||..| |||||                    ||
BSU17480___yn    171 ----AGGA-----CAAATCGAAGGCATC--------------------TG    191

BSNT_02876       233 GAGATGTGCTAAATGATTTTACAGCTGAGAGATGTTTTGAAAAAGAATAC    282
                     |             .|||.||.||                          
BSU17480___yn    192 G-------------CATTCTATAG--------------------------    202

BSNT_02876       283 CGTTCACAAATAGCAATTAATTACTATCAACCT---GCAATAGTCTGTGA    329
                           |||||  |||||  |||  .|||  ||   .|||..||.||.||
BSU17480___yn    203 ------CAAAT--CAATT--TTA--TTCA--CTCGCCCAAGGGTTTGAGA    238

BSNT_02876       330 TGATGAAGA-ATTAGACTGTTTCACAAT-GGATTTGTGGTATTACTACGG    377
                       ||||.|| ||            |||| .|.|||         ||.|||
BSU17480___yn    239 --ATGAGGATAT------------CAATAAGCTTT---------CTGCGG    265

BSNT_02876       378 ---TGGAT-ATAAAGGG--------ACGGGTTGTGGAA-CTTTATTCGAT    414
                        |.||| ||     |        ||   ||| |||| ||.| |.|   
BSU17480___yn    266 ATCTTGATCAT-----GCTGCCGCCAC---TTG-GGAAGCTGT-TGC---    302

BSNT_02876       415 TTAAATAATAATGACTTAGAAAAAGAAATTGAAGAGGCGCTA--ATATTT    462
                          ||||||      ||.||||||..|||         ||  |.|||.
BSU17480___yn    303 -----TAATAA------AGCAAAAGAGTTTG---------TAACAAATTC    332

BSNT_02876       463 TTACTCAATGACAAACAATTCGAGAAATAA    492
                     .||| |||.|..||                
BSU17480___yn    333 ATAC-CAAGGGTAA----------------    345


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